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scnpilot_solids2_trim150_scaffold_2673_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2673_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..158
DNA (156bp) protein (52aa)
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMM3_9GAMM
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:EIM00715.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
isopropylmalate/homocitrate/citramalate synthase
scnpilot_solids2_trim150_scaffold_2673_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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220..1539
DNA (1320bp) protein (440aa)
Amidohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5X1_9GAMM
Amidohydrolase {ECO:0000313|EMBL:EIL94862.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
amidohydrolase, imidazolonepropionase
scnpilot_solids2_trim150_scaffold_2673_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1536..2024
DNA (489bp) protein (163aa)
Acetyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5X0_9GAMM
Acetyltransferase {ECO:0000313|EMBL:EIL94861.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetyltransferase, N-acetylglutamate synthase
scnpilot_solids2_trim150_scaffold_2673_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2029..2610
DNA (582bp) protein (194aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5W8_9GAMM
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIL94859.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
sortase-like acyltransferase
scnpilot_solids2_trim150_scaffold_2673_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2711..3145)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WML1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00703.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative integral membrane protein
scnpilot_solids2_trim150_scaffold_2673_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3353..4120
DNA (768bp) protein (256aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5W6_9GAMM
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIL94857.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids2_trim150_scaffold_2673_curated_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4248..4811
DNA (564bp) protein (188aa)
Elongation factor P n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5W3_9GAMM
Elongation factor P {ECO:0000313|EMBL:EIL94854.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
translation elongation factor P/translation initiation factor 5A
scnpilot_solids2_trim150_scaffold_2673_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4974..7034
DNA (2061bp) protein (687aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMK8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00700.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2673_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7149..8183
DNA (1035bp) protein (345aa)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTP3_9GAMM
putative TIM-barrel fold metal-dependent hydrolase
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:AGG88372.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2673_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8180..8695
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NKS7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88371.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2673_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8791..10068
DNA (1278bp) protein (426aa)
Kynureninase (EC:3.7.1.3)
Kynureninase {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800}; EC=3.7.1.3 {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800};; L-kynurenine hydrolase {ECO:0000256|HAMAP-Rule:MF_01970}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Kynureninase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCG2_9GAMM
scnpilot_solids2_trim150_scaffold_2673_curated_12
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10217..10432
DNA (216bp) protein (72aa)
transposase n=1 Tax=Salinimonas chungwhensis RepID=UPI0003768288
transposase
Transposase {ECO:0000313|EMBL:AGT10557.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
scnpilot_solids2_trim150_scaffold_2673_curated_13
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

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10543..11055
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288D6EE
Tax=BJP_IG2102_Coriobacteriales_64_17
scnpilot_solids2_trim150_scaffold_2673_curated_14
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11057..11278
DNA (222bp) protein (74aa)
Cro/Cl family transcriptional regulator n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I264_9SPHN
transcriptional regulator; K07727 putative transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids2_trim150_scaffold_2673_curated_15
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

11282..11722
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZTJ4_9BACT
hypothetical protein
Tax=BJP_IG2102_Coriobacteriales_64_17
scnpilot_solids2_trim150_scaffold_2673_curated_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11896..12609
DNA (714bp) protein (238aa)
hypothetical protein id=24437570 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
scnpilot_solids2_trim150_scaffold_2673_curated_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12755..13402)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WWC4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03766.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids2_trim150_scaffold_2673_curated_18
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13432..14292)
DNA (861bp) protein (287aa)
Putative transcriptional regulator n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTK4_9GAMM
Putative transcriptional regulator {ECO:0000313|EMBL:EAR20960.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2673_curated_19
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14482..15318
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7HEL4_XANCT
Uncharacterized protein {ECO:0000313|EMBL:ELQ16495.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
putative methyltransferase
scnpilot_solids2_trim150_scaffold_2673_curated_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15525..16364)
DNA (840bp) protein (280aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4D4_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL94325.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
penicillin-binding protein, beta-lactamase class C
Displaying 20 items

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