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scnpilot_solids2_trim150_scaffold_80_curated

Search features with annotation key words

Displaying items 1-30 of 138 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_80_curated_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..621)
DNA (621bp) protein (207aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ribosome small subunit-dependent GTPase A; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
ribosome small subunit-dependent GTPase A n=1 Tax=Dyella japonica RepID=UPI0002D6C88E
scnpilot_solids2_trim150_scaffold_80_curated_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

713..1957
DNA (1245bp) protein (415aa)
Aminotransferase AlaT n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE15_9GAMM
Aminotransferase {ECO:0000313|EMBL:GAN45874.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
aspartate/tyrosine/aromatic aminotransferase
scnpilot_solids2_trim150_scaffold_80_curated_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1961..2572
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR51_9GAMM
Lysophospholipase {ECO:0000313|EMBL:GAN45875.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_80_curated_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2602..3135
DNA (534bp) protein (178aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
signal peptidase II (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNY9_9GAMM
scnpilot_solids2_trim150_scaffold_80_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3388..4554
DNA (1167bp) protein (389aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
succinyl-CoA synthetase (ADP-forming) beta subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI9_9GAMM
scnpilot_solids2_trim150_scaffold_80_curated_6
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4680..5555
DNA (876bp) protein (292aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
succinyl-CoA synthetase (ADP-forming) alpha subunit (EC:6.2.1.5)
succinyl-CoA synthetase subunit alpha n=1 Tax=Rudaea cellulosilytica RepID=UPI000360CD0C
scnpilot_solids2_trim150_scaffold_80_curated_7
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5693..6082
DNA (390bp) protein (130aa)
DNA methyltransferase {ECO:0000313|EMBL:EYR69106.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Uncharacterized protein id=4238766 bin=GWA2_Elusimicrobia_69_24 species=Alcanivorax dieselolei genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
DNA methyltransferase
scnpilot_solids2_trim150_scaffold_80_curated_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6079..7761
DNA (1683bp) protein (561aa)
NAD synthetase {ECO:0000313|EMBL:EIL96242.1}; EC=6.3.5.1 {ECO:0000313|EMBL:EIL96242.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
NAD synthetase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9V1_9GAMM
NAD+ synthetase
scnpilot_solids2_trim150_scaffold_80_curated_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8457..9299)
DNA (843bp) protein (281aa)
outer membrane assembly protein YfiO n=1 Tax=Dyella japonica RepID=UPI0002DFACA5
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Beta-barrel assembly machine subunit BamD
scnpilot_solids2_trim150_scaffold_80_curated_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9372..10325
DNA (954bp) protein (318aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAJ2_9GAMM
scnpilot_solids2_trim150_scaffold_80_curated_11
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10333..11331
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY25_9GAMM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
uncharacterized protein, YfiH family
scnpilot_solids2_trim150_scaffold_80_curated_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11347..12000)
DNA (654bp) protein (218aa)
Keto-deoxy-phosphogluconate aldolase {ECO:0000313|EMBL:KGI77708.1}; EC=4.1.2.14 {ECO:0000313|EMBL:KGI77708.1};; EC=4.1.3.16 {ECO:0000313|EMBL:KGI77708.1};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
2-keto-3-deoxy-phosphogluconate aldolase (EC:4.1.2.14)
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2D9_9GAMM
scnpilot_solids2_trim150_scaffold_80_curated_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12026..13858)
DNA (1833bp) protein (611aa)
Phosphogluconate dehydratase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VUW2_9GAMM
Phosphogluconate dehydratase {ECO:0000313|EMBL:KGI77568.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
6-phosphogluconate dehydratase
scnpilot_solids2_trim150_scaffold_80_curated_14
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13896..15446)
DNA (1551bp) protein (517aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
glucose-6-phosphate dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTL7_PSEUP
scnpilot_solids2_trim150_scaffold_80_curated_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15508..16251
DNA (744bp) protein (248aa)
Transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VP83_9GAMM
GntR family transcriptional regulator {ECO:0000313|EMBL:KGI77565.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_80_curated_16
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16271..16615
DNA (345bp) protein (115aa)
AIG2-like family protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RVJ9_9BURK
AIG2-like family protein {ECO:0000313|EMBL:EFV95803.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_80_curated_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16682..17218
DNA (537bp) protein (179aa)
N-acetyltransferase GCN5 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M7J4_9RHIZ
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EKF18161.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
N-acetyltransferase GCN5
scnpilot_solids2_trim150_scaffold_80_curated_18
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17494..17778
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. Lz4W RepID=M5QIR3_9PSED
Alpha/beta hydrolase {ECO:0000313|EMBL:KHA80655.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
hypothetical protein; K07002
scnpilot_solids2_trim150_scaffold_80_curated_19
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17830..18192
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SYS7_XANCT
Uncharacterized protein {ECO:0000313|EMBL:KJV33819.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_80_curated_20
unknown

Not on your lists

comp(18907..19215)
DNA (309bp) protein (103aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_80_curated_21
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19308..19688
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PBD3_9BURK
Glyoxalase {ECO:0000313|EMBL:KGM55578.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
glyoxalase family protein
scnpilot_solids2_trim150_scaffold_80_curated_22
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19729..21081)
DNA (1353bp) protein (451aa)
Trehalose-6-phosphate synthase; K00697 trehalose 6-phosphate synthase [EC:2.4.1.15]
Trehalose-6-phosphate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYL4_9GAMM
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_80_curated_23
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21156..23063)
DNA (1908bp) protein (636aa)
glucoamylase n=1 Tax=Dyella ginsengisoli RepID=UPI00034C6FD1
Glycosyl hydrolase {ECO:0000313|EMBL:KGQ20177.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_80_curated_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23067..23906)
DNA (840bp) protein (280aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
trehalose-phosphatase (EC:3.1.3.12); K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00036FFE64
scnpilot_solids2_trim150_scaffold_80_curated_25
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23982..24746)
DNA (765bp) protein (255aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
acyltransferase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037D72FA
scnpilot_solids2_trim150_scaffold_80_curated_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24892..27492
DNA (2601bp) protein (867aa)
protein disaggregation chaperone n=1 Tax=Dyella ginsengisoli RepID=UPI000346B215
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ATP-dependent chaperone ClpB
scnpilot_solids2_trim150_scaffold_80_curated_27
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27846..29507
DNA (1662bp) protein (554aa)
TPR repeat protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZIQ6_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_solids2_trim150_scaffold_80_curated_28
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29493..30641)
DNA (1149bp) protein (383aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Dyella japonica RepID=UPI0002FE297D
scnpilot_solids2_trim150_scaffold_80_curated_29
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30911..33298)
DNA (2388bp) protein (796aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C6ABA
Ligand-gated channel {ECO:0000313|EMBL:KGI77025.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
outer membrane cobalamin receptor protein
scnpilot_solids2_trim150_scaffold_80_curated_30
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33437..34669)
DNA (1233bp) protein (411aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWU2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGI77027.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transmembrane transport protein
Displaying items 1-30 of 138 in total

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