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RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_1
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(139..345)
DNA (207bp) protein (69aa)
id=2008110 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2008110 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_2
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(492..1082)
DNA (591bp) protein (197aa)
Sigma-70 region 2 id=2008111 bin=GWD2_Bacteroidetes_40_43 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWE2_Bacteroidetes_40_63_curated
RNA polymerase subunit sigma-24
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_3
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1286..4078
DNA (2793bp) protein (931aa)
excinuclease ABC subunit A id=4891457 bin=GWC2_Bacteroidetes_40_13 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
excinuclease ABC subunit a; K03701 excinuclease ABC subunit A Tax=GWE2_Bacteroidetes_40_63_curated
excinuclease ABC subunit A
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_4
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4100..6154)
DNA (2055bp) protein (685aa)
id=2008115 bin=GWD2_Bacteroidetes_40_43 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2008115 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_5
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6384..7658
DNA (1275bp) protein (425aa)
Nuclease SbcCD, D subunit id=2008117 bin=GWD2_Bacteroidetes_40_43 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
nuclease SbcCD subunit D; K03547 exonuclease SbcD Tax=GWE2_Bacteroidetes_40_63_curated
DNA repair exonuclease
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_6
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7700..10774
DNA (3075bp) protein (1025aa)
SMC domain-containing protein; K03546 exonuclease SbcC Tax=GWE2_Bacteroidetes_40_63_curated
ATPase involved in DNA repair, putative id=3400272 bin=GWF2_Bacteroidetes_40_13 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_7
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11116..11394
DNA (279bp) protein (93aa)
Putative uncharacterized protein id=3400270 bin=GWF2_Bacteroidetes_40_13 species=[Bacteroides] pectinophilus genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
DNA-binding protein HU; K03530 DNA-binding protein HU-beta Tax=GWE2_Bacteroidetes_40_63_curated
Bacterial nucleoid DNA-binding protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_8
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11481..12767
DNA (1287bp) protein (429aa)
Polysaccharide biosynthesis protein id=2008123 bin=GWD2_Bacteroidetes_40_43 species=Pseudomonas putida genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
O-antigen translocase Tax=GWE2_Bacteroidetes_40_63_curated
O-antigen translocase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_9
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12819..13949
DNA (1131bp) protein (377aa)
Glycosyl transferase group 1 id=3400264 bin=GWF2_Bacteroidetes_40_13 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
group 1 glycosyl transferase Tax=GWE2_Bacteroidetes_40_63_curated
group 1 glycosyl transferase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_10
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13977..14966
DNA (990bp) protein (330aa)
Glycosyl transferase id=2008135 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=Nitratiruptor taxon_order=unknown taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
glycosyl transferase Tax=GWE2_Bacteroidetes_40_63_curated
glycosyl transferase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_11
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14957..15853
DNA (897bp) protein (299aa)
Putative uncharacterized protein id=2008140 bin=GWD2_Bacteroidetes_40_43 species=Shewanella piezotolerans genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_12
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15864..16814)
DNA (951bp) protein (317aa)
Chain length determinant protein id=2008145 bin=GWD2_Bacteroidetes_40_43 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
Chain length determinant protein Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_13
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16841..17704)
DNA (864bp) protein (288aa)
hypothetical protein MsalJ2_16026 id=2008151 bin=GWD2_Bacteroidetes_40_43 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_14
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17710..18582)
DNA (873bp) protein (291aa)
purine or other phosphorylase family 1; K00757 uridine phosphorylase [EC:2.4.2.3] Tax=GWE2_Bacteroidetes_40_63_curated
purine or other phosphorylase family 1 id=3400240 bin=GWF2_Bacteroidetes_40_13 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
purine or other phosphorylase family 1
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_15
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18690..19565
DNA (876bp) protein (292aa)
UspA domain-containing protein id=2008153 bin=GWD2_Bacteroidetes_40_43 species=Nitritalea halalkaliphila genus=Nitritalea taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
uspa domain-containing protein Tax=GWE2_Bacteroidetes_40_63_curated
uspa domain-containing protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_16
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19710..21119)
DNA (1410bp) protein (470aa)
Orn/DAP/Arg decarboxylase 2; K01585 arginine decarboxylase [EC:4.1.1.19] Tax=GWE2_Bacteroidetes_40_63_curated
Orn/DAP/Arg decarboxylase 2 id=1861670 bin=GWE2_Bacteroidetes_40_63 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_63 organism_group=Bacteroidetes organism_desc=Good
decarboxylase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_17
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21300..21956)
DNA (657bp) protein (219aa)
Channel protein, hemolysin III family id=3400227 bin=GWF2_Bacteroidetes_40_13 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
hemolysin III family channel protein; K11068 hemolysin III Tax=GWE2_Bacteroidetes_40_63_curated
hemolysin III family channel protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_18
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21958..22419)
DNA (462bp) protein (154aa)
id=2008188 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2008188 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_19
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22422..22946)
DNA (525bp) protein (175aa)
id=2008190 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2008190 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_20
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22954..23391)
DNA (438bp) protein (146aa)
id=2008191 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2008191 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_21
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23635..25545
DNA (1911bp) protein (637aa)
histidine kinase hamp region domain protein Tax=GWE2_Bacteroidetes_40_63_curated
Histidine kinase HAMP region domain protein id=2008192 bin=GWD2_Bacteroidetes_40_43 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
histidine kinase hamp region domain protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_22
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25650..25745)
DNA (96bp) protein (32aa)
id=2008195 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2008195 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_23
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25923..27143)
DNA (1221bp) protein (407aa)
ornithine aminotransferase (EC:2.6.1.13); K00819 ornithine--oxo-acid transaminase [EC:2.6.1.13] Tax=GWE2_Bacteroidetes_40_63_curated
ornithine aminotransferase (EC:2.6.1.13)
Ornithine aminotransferase id=4891482 bin=GWC2_Bacteroidetes_40_13 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_24
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27404..27739)
DNA (336bp) protein (112aa)
Uncharacterized protein id=3400202 bin=GWF2_Bacteroidetes_40_13 species=Flexibacter litoralis genus=Flexibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_25
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27913..28479
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=3400198 bin=GWF2_Bacteroidetes_40_13 species=uncultured Flavobacteriia bacterium genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
yckC3; putative RDD domain containing protein Tax=GWE2_Bacteroidetes_40_63_curated
yckC3; putative RDD domain containing protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_26
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28643..30448)
DNA (1806bp) protein (602aa)
homoaconitate hydratase family protein Tax=GWE2_Bacteroidetes_40_63_curated
Homoaconitate hydratase family protein id=4891507 bin=GWC2_Bacteroidetes_40_13 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
homoaconitate hydratase family protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_27
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31329..32039
DNA (711bp) protein (237aa)
pyk; pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] Tax=GWE2_Bacteroidetes_40_63_curated
Pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase id=1813863 bin=GWD2_Bacteroidetes_40_43 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_28
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32112..32744
DNA (633bp) protein (211aa)
WbqC-like protein id=1813865 bin=GWD2_Bacteroidetes_40_43 species=Bacteroides caccae genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
WbqC-like protein family. Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_29
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32798..33484)
DNA (687bp) protein (229aa)
hypothetical protein AnHS1_11177 id=1813867 bin=GWD2_Bacteroidetes_40_43 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_513_30
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33644..34207)
DNA (564bp) protein (188aa)
id=1813869 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=1813869 Tax=GWE2_Bacteroidetes_40_63_curated
Displaying items 1-30 of 49 in total

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