ggKbase home page

RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_1
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12..470
DNA (459bp) protein (153aa)
NADH dehydrogenase (ubiquinone) 30 kDa subunit; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
NADH-quinone oxidoreductase subunit C/D id=4637850 bin=GWF2_Bacteroidetes_40_13 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
NADH dehydrogenase (ubiquinone) 30 kDa subunit
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_2
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

480..1601
DNA (1122bp) protein (374aa)
NADH dehydrogenase I subunit D; K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
NADH-quinone oxidoreductase subunit D id=4637851 bin=GWF2_Bacteroidetes_40_13 species=unknown genus=Maribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
NADH dehydrogenase I subunit D
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_3
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1612..2700
DNA (1089bp) protein (363aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
NADH:ubiquinone oxidoreductase subunit H (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit H id=2007666 bin=GWD2_Bacteroidetes_40_43 species=Odoribacter laneus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_4
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2708..3190
DNA (483bp) protein (161aa)
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein id=2007669 bin=GWD2_Bacteroidetes_40_43 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
4Fe-4S ferredoxin
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_5
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3187..3714
DNA (528bp) protein (176aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 id=2007672 bin=GWD2_Bacteroidetes_40_43 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_6
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3721..4038
DNA (318bp) protein (106aa)
NAD(P)H-quinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
NADH-quinone oxidoreductase subunit K id=2106856 bin=GWE2_Bacteroidetes_40_63 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_63 organism_group=Bacteroidetes organism_desc=Good
NAD(P)H-quinone oxidoreductase subunit 4L
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_7
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4062..5981
DNA (1920bp) protein (640aa)
putative NADH dehydrogenase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
Putative NADH dehydrogenase chain L id=3665292 bin=GWC2_Bacteroidetes_40_13 species=unknown genus=Maribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
putative NADH dehydrogenase subunit L
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_8
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6002..7501
DNA (1500bp) protein (500aa)
NADH dehydrogenase I subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
Putative uncharacterized protein id=2007710 bin=GWD2_Bacteroidetes_40_43 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
NADH dehydrogenase subunit M
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_9
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7526..8947
DNA (1422bp) protein (474aa)
putative NADH dehydrogenase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=GWE2_Bacteroidetes_40_63_curated
NADH-quinone oxidoreductase subunit N id=2007711 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=Maribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
putative NADH dehydrogenase subunit N
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_10
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8957..9268
DNA (312bp) protein (104aa)
Putative uncharacterized protein id=2007712 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=Maribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_11
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9288..9425
DNA (138bp) protein (46aa)
id=2007713 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2007713 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_12
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9368..11221
DNA (1854bp) protein (618aa)
asnB; asparagine synthase (EC:6.3.5.4); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] Tax=GWE2_Bacteroidetes_40_63_curated
asnB; asparagine synthase (EC:6.3.5.4)
Asparagine synthetase id=2007714 bin=GWD2_Bacteroidetes_40_43 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_13
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11311..12303
DNA (993bp) protein (331aa)
Probable acyl-protein synthetase id=2007715 bin=GWD2_Bacteroidetes_40_43 species=Flavobacterium branchiophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
putative acyl-protein synthetase Tax=GWE2_Bacteroidetes_40_63_curated
putative acyl-protein synthetase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_14
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12398..13666
DNA (1269bp) protein (423aa)
purD; Phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=GWE2_Bacteroidetes_40_63_curated
purD; Phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase id=2007716 bin=GWD2_Bacteroidetes_40_43 species=Tannerella sp. 6_1_58FAA_CT1 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_15
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13623..14660
DNA (1038bp) protein (346aa)
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein PagrP_16963 id=2007717 bin=GWD2_Bacteroidetes_40_43 species=Pedobacter agri genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_16
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14726..18508
DNA (3783bp) protein (1261aa)
putative PAS sensor signal transduction histidine kinase Tax=GWE2_Bacteroidetes_40_63_curated
Putative PAS sensor signal transduction histidine kinase id=2007718 bin=GWD2_Bacteroidetes_40_43 species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
PAS sensor signal transduction histidine kinase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_17
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18580..19008)
DNA (429bp) protein (143aa)
Putative uncharacterized protein id=2007719 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
Putative uncharacterized protein Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_18
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19010..19933)
DNA (924bp) protein (308aa)
hypothetical protein AnHS1_01688 id=2007720 bin=GWD2_Bacteroidetes_40_43 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_19
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19996..23052)
DNA (3057bp) protein (1019aa)
ABC transporter id=4637950 bin=GWF2_Bacteroidetes_40_13 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
ABC transporter Tax=GWE2_Bacteroidetes_40_63_curated
ABC transporter
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_20
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23099..23482)
DNA (384bp) protein (128aa)
hypothetical protein AnHS1_01678 id=2007722 bin=GWD2_Bacteroidetes_40_43 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_21
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23495..24079)
DNA (585bp) protein (195aa)
hypothetical protein AtheD1_08093 id=2007725 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_22
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24098..26722)
DNA (2625bp) protein (875aa)
pas/pac sensor protein Tax=GWE2_Bacteroidetes_40_63_curated
pas/pac sensor protein id=3665171 bin=GWC2_Bacteroidetes_40_13 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
pas/pac sensor protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_23
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26739..27509)
DNA (771bp) protein (257aa)
GAF domain protein id=2007731 bin=GWD2_Bacteroidetes_40_43 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
gaf domain protein Tax=GWE2_Bacteroidetes_40_63_curated
gaf domain protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_24
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27518..28081)
DNA (564bp) protein (188aa)
cheb methylesterase (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61] Tax=GWE2_Bacteroidetes_40_63_curated
cheb methylesterase (EC:3.1.1.61)
CheB methylesterase id=3665169 bin=GWC2_Bacteroidetes_40_13 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_25
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28083..28910)
DNA (828bp) protein (276aa)
mcp methyltransferase, cher-type (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] Tax=GWE2_Bacteroidetes_40_63_curated
mcp methyltransferase, cher-type (EC:2.1.1.80)
MCP methyltransferase, CheR-type id=2007738 bin=GWD2_Bacteroidetes_40_43 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_26
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28923..29765)
DNA (843bp) protein (281aa)
mcp methyltransferase, cher-type (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] Tax=GWE2_Bacteroidetes_40_63_curated
mcp methyltransferase, cher-type (EC:2.1.1.80)
mcp methyltransferase, cher-type id=2007742 bin=GWD2_Bacteroidetes_40_43 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_27
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30384..32252)
DNA (1869bp) protein (623aa)
aspA; Aspartate ammonia-lyase Tax=GWE2_Bacteroidetes_40_63_curated
Fumarate hydratase class II id=3665166 bin=GWC2_Bacteroidetes_40_13 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
aspA; Aspartate ammonia-lyase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_28
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32385..33401
DNA (1017bp) protein (339aa)
Putative uncharacterized protein id=4637968 bin=GWF2_Bacteroidetes_40_13 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_29
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33566..37180
DNA (3615bp) protein (1205aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=GWE2_Bacteroidetes_40_63_curated
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-)
PAS/PAC sensor hybrid histidine kinase id=3665164 bin=GWC2_Bacteroidetes_40_13 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_200_30
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37428..38042)
DNA (615bp) protein (205aa)
polysaccharide deacetylase (EC:3.5.1.-) Tax=GWE2_Bacteroidetes_40_63_curated
GlcNAc deacetylase-related protein, carbohydrate esterase family 4 protein id=2007784 bin=GWD2_Bacteroidetes_40_43 species=Flavobacteriales bacterium ALC-1 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
polysaccharide deacetylase
Displaying items 1-30 of 62 in total

View Taxonomy