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A1-16-all-fractions_metab_12

wsip-metawrap-drep-bins_Actinobacteria_71_1
In projects: wsip-metawrap-drep-bins  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 0.66 Longest contig: 21.82 Kbp Bin length: 5.34 Mbp GC content: 70.72 %
Contigs count: 1126 Features count: 5687 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 38 / 55 MC: 8 BSCG 37 / 51 MC: 13 ASCG 10 / 38 MC: 1
Displaying items 601-650 of 1126 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
A1-16-all-fractions_k255_5020712
Species: Geodermatophilus obscurus (50%)
2 1630 bp 69.94 1.29 90.18
A1-16-all-fractions_k255_1839505
Genus: Streptomyces (50%)
4 2901 bp 72.87 0.31 90.18
A1-16-all-fractions_k255_2261639
Species: Ktedonobacter racemifer (80%)
5 4751 bp 68.07 0.38 90.17
A1-16-all-fractions_k255_823934
Species: Microbispora sp. ATCC PTA-5024 (66.67%)
3 1977 bp 73.34 0.23 90.14
A1-16-all-fractions_k255_4018484
Class: Actinobacteria (75%)
8 6764 bp 71.67 0.58 90.08
A1-16-all-fractions_k255_1011078
Class: Actinobacteria (50%)
6 3344 bp 71.53 0.40 90.07
A1-16-all-fractions_k255_1435071
Class: Actinobacteria (100%)
3 2032 bp 66.73 1.40 90.06
A1-16-all-fractions_k255_3365977
Class: Actinobacteria (50%)
6 3921 bp 70.26 0.34 90.05
A1-16-all-fractions_k255_37174
Species: Catenulispora acidiphila (50%)
2 2342 bp 66.87 0.51 90.05
A1-16-all-fractions_k255_2527950
Class: Actinobacteria (50%)
18 18026 bp 71.59 0.74 90.04
A1-16-all-fractions_k255_1993574
Class: Actinobacteria (80%)
5 4094 bp 71.84 0.81 89.99
A1-16-all-fractions_k255_1284626
Genus: Streptomyces (66.67%)
3 3914 bp 71.44 0.34 89.98
A1-16-all-fractions_k255_1101985
Class: Actinobacteria (80%)
5 4271 bp 71.97 1.23 89.98
A1-16-all-fractions_k255_1768071
Class: Actinobacteria (80%)
5 3421 bp 72.67 0.66 89.97
A1-16-all-fractions_k255_3246640
Species: Blastococcus saxobsidens (100%)
1 1864 bp 68.24 0.72 89.97
A1-16-all-fractions_k255_1229091
Class: Actinobacteria (50%)
8 5589 bp 69.76 0.59 89.96
A1-16-all-fractions_k255_1032237
Phylum: Actinobacteria (50%)
4 3078 bp 70.40 1.22 89.96
A1-16-all-fractions_k255_3648131
Genus: Frankia (66.67%)
3 3126 bp 69.77 0.62 89.92
A1-16-all-fractions_k255_374555
Class: Actinobacteria (60%)
5 6583 bp 72.92 0.48 89.91
A1-16-all-fractions_k255_1685863
Class: Actinobacteria (100%)
3 3677 bp 70.22 0.65 89.91
A1-16-all-fractions_k255_3102398
Class: Actinobacteria (88.89%)
9 8636 bp 71.84 0.35 89.90
A1-16-all-fractions_k255_4478972
Phylum: Actinobacteria (50%)
4 3435 bp 72.75 0.83 89.87
A1-16-all-fractions_k255_4869007
Order: Streptosporangiales (75%)
12 14535 bp 72.14 0.90 89.87
A1-16-all-fractions_k255_2801269
Class: Actinobacteria (71.43%)
14 13475 bp 70.98 0.49 89.86
A1-16-all-fractions_k255_3718611
Species: Microbacterium azadirachtae (66.67%)
3 2070 bp 72.03 1.38 89.86
A1-16-all-fractions_k255_4000800
Phylum: Proteobacteria (66.67%)
3 2481 bp 70.25 0.30 89.84
A1-16-all-fractions_k255_4239570
Order: Pseudonocardiales (50%)
6 6665 bp 70.98 1.28 89.84
A1-16-all-fractions_k255_4027847
Class: Actinobacteria (71.43%)
7 8335 bp 70.56 0.54 89.84
A1-16-all-fractions_k255_1336232
Order: Streptosporangiales (66.67%)
3 2672 bp 69.20 0.73 89.82
A1-16-all-fractions_k255_1604101
Class: Actinobacteria (92.31%)
13 13534 bp 71.24 0.53 89.80
A1-16-all-fractions_k255_2159358
Order: Streptosporangiales (66.67%)
3 2616 bp 69.99 0.52 89.79
A1-16-all-fractions_k255_26453
Class: Actinobacteria (50%)
14 14689 bp 70.67 0.50 89.78
A1-16-all-fractions_k255_679515
Species: Amycolatopsis mediterranei (66.67%)
3 2313 bp 68.27 0.58 89.75
A1-16-all-fractions_k255_3782760
Class: Actinobacteria (100%)
3 2621 bp 69.71 0.63 89.74
A1-16-all-fractions_k255_1010235
Species: Thermomonospora curvata (66.67%)
3 2545 bp 71.79 0.59 89.71
A1-16-all-fractions_k255_25514
Class: Actinobacteria (66.67%)
9 6127 bp 70.15 0.32 89.70
A1-16-all-fractions_k255_1121789
Genus: Frankia (57.14%)
7 5338 bp 70.91 0.31 89.70
A1-16-all-fractions_k255_4742974
Species: Ilumatobacter coccineus (50%)
2 1659 bp 67.57 0.00 89.69
A1-16-all-fractions_k255_1031490
Species: Amycolatopsis mediterranei (66.67%)
6 5514 bp 69.37 0.49 89.66
A1-16-all-fractions_k255_1986676
Class: Actinobacteria (75%)
8 7281 bp 71.97 0.35 89.66
A1-16-all-fractions_k255_2243769
Class: Actinobacteria (80%)
5 2995 bp 72.19 0.55 89.65
A1-16-all-fractions_k255_3400929
Genus: Streptomyces (75%)
4 3186 bp 70.75 1.65 89.64
A1-16-all-fractions_k255_3455270
Species: Frankia sp. EUN1f (50%)
2 1905 bp 69.29 1.18 89.61
A1-16-all-fractions_k255_4750781
Order: Streptosporangiales (50%)
4 5250 bp 71.50 0.51 89.60
A1-16-all-fractions_k255_4610883
Class: Actinobacteria (100%)
3 2394 bp 70.43 0.75 89.60
A1-16-all-fractions_k255_4160005
Class: Actinobacteria (90%)
10 8201 bp 71.55 0.55 89.59
A1-16-all-fractions_k255_4194267
Class: Actinobacteria (100%)
6 5335 bp 71.60 1.07 89.58
A1-16-all-fractions_k255_1488035
Class: Actinobacteria (100%)
4 3702 bp 69.61 0.81 89.55
A1-16-all-fractions_k255_3119423
Species: Frankia sp. QA3 (50%)
2 1823 bp 70.49 0.33 89.52
A1-16-all-fractions_k255_960021
Genus: Streptomyces (50%)
4 2299 bp 69.29 0.72 89.52
Displaying items 601-650 of 1126 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.