ggKbase | organisms

Consensus taxonomy: Actinobacteria → Actinobacteria → Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 0.66 Longest contig: 21.82 Kbp Bin length: 5.34 Mbp GC content: 70.72 %

Contigs count: 1126 Features count: 5687 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 38 / 55 MC: 8 BSCG 37 / 51 MC: 13 ASCG 10 / 38 MC: 1

Displaying items 1001-1050 of 1126 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
A1-16-all-fractions_k255_94439 Species: Cellulosimicrobium sp. MM (50%)	2	1705 bp	71.67	0.88	82.87
A1-16-all-fractions_k255_2572198 Species: Conexibacter woesei (50%)	2	1728 bp	72.69	0.61	83.85
A1-16-all-fractions_k255_3674975 Species: Saccharomonospora marina (50%)	2	2409 bp	71.27	0.87	89.29
A1-16-all-fractions_k255_100026 Species: Rhodococcus jostii (50%)	2	1641 bp	70.44	4.20	96.16
A1-16-all-fractions_k255_3678638 Species: uncultured bacterium 14-4D (50%)	2	1518 bp	63.11	0.49	88.34
A1-16-all-fractions_k255_2575837 Species: Streptomonospora alba (50%)	2	4032 bp	69.97	0.52	81.10
A1-16-all-fractions_k255_4863817 Species: Kribbella flavida (50%)	2	1845 bp	70.57	0.73	95.28
A1-16-all-fractions_k255_116220 Species: Frankia sp. EAN1pec (50%)	2	1697 bp	67.59	1.24	65.06
A1-16-all-fractions_k255_119475 Species: Streptomyces iranensis (50%)	2	1620 bp	65.25	0.00	86.11
A1-16-all-fractions_k255_1478505 Species: Pseudonocardia dioxanivorans (100%)	2	1529 bp	69.06	0.59	90.26
A1-16-all-fractions_k255_2609948 Species: Mycobacterium thermoresistibile (50%)	2	1544 bp	71.63	0.97	95.01
A1-16-all-fractions_k255_3728950 Species: Thermomonospora curvata (50%)	2	2782 bp	68.66	0.54	88.86
A1-16-all-fractions_k255_4922953 Species: Blastococcus saxobsidens (50%)	2	1517 bp	68.03	0.59	52.21
A1-16-all-fractions_k255_204277 Species: Ktedonobacter racemifer (50%)	2	1719 bp	72.66	0.00	91.10
A1-16-all-fractions_k255_3745757 Species: Catenulispora acidiphila (50%)	2	2057 bp	70.20	0.73	76.28
A1-16-all-fractions_k255_2652759 Species: Kutzneria albida (50%)	2	2168 bp	73.29	0.55	84.13
A1-16-all-fractions_k255_3766173 Species: Rhodococcus triatomae (50%)	2	2628 bp	66.40	0.68	84.13
A1-16-all-fractions_k255_1519234 Species: Eimeria necatrix (50%)	2	1954 bp	70.16	0.31	93.19
A1-16-all-fractions_k255_3772667 Species: RBG_16_RIF_CHLX_72_14_curated (50%)	2	2006 bp	67.90	2.99	81.36
A1-16-all-fractions_k255_238427 Species: Thermomonospora curvata (50%)	2	3818 bp	71.24	0.75	92.17
A1-16-all-fractions_k255_241316 Species: Mycobacterium canettii (50%)	2	1501 bp	68.15	4.50	90.74
A1-16-all-fractions_k255_2681343 Species: Frankia sp. CcI3 (50%)	2	1711 bp	71.30	0.79	80.83
A1-16-all-fractions_k255_1534500 Species: Ktedonobacter racemifer (100%)	2	1562 bp	65.69	1.15	88.92
A1-16-all-fractions_k255_2683472 Species: Kitasatospora setae (50%)	2	3249 bp	68.05	0.32	90.86
A1-16-all-fractions_k255_3780291 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1677 bp	72.63	0.89	89.09
A1-16-all-fractions_k255_4969635 Species: Thermomonospora curvata (100%)	2	2090 bp	72.97	0.65	99.76
A1-16-all-fractions_k255_259177 Species: Achromobacter arsenitoxydans (50%)	2	1699 bp	68.75	0.09	60.92
A1-16-all-fractions_k255_4970726 Species: Microbacterium azadirachtae (50%)	2	3120 bp	72.44	0.77	97.88
A1-16-all-fractions_k255_269631 Species: RIFOXYB12_FULL_Lentisphaerae_65_16_curated (50%)	2	1560 bp	71.79	1.54	90.38
A1-16-all-fractions_k255_3804553 Species: Thermomonospora curvata (50%)	2	2018 bp	75.17	1.11	81.32
A1-16-all-fractions_k255_293529 Species: Streptosporangium roseum (50%)	2	1969 bp	67.14	0.15	55.46
A1-16-all-fractions_k255_1561087 Species: Amycolatopsis sp. MJM2582 (50%)	2	1630 bp	72.27	0.83	98.28
A1-16-all-fractions_k255_2722267 Species: Acidithrix ferrooxidans (50%)	2	3219 bp	72.69	0.33	88.91
A1-16-all-fractions_k255_1565414 Species: Conexibacter woesei (50%)	2	1656 bp	68.00	0.82	98.37
A1-16-all-fractions_k255_4994538 Species: Mycobacterium rhodesiae (100%)	2	2150 bp	71.77	1.05	93.49
A1-16-all-fractions_k255_1623083 Species: R_Acidobacteria_65_29 (50%)	2	1738 bp	71.23	0.78	85.44
A1-16-all-fractions_k255_5020712 Species: Geodermatophilus obscurus (50%)	2	1630 bp	69.94	1.29	90.18
A1-16-all-fractions_k255_1646620 Species: Kutzneria albida (50%)	2	1949 bp	71.27	0.31	83.27
A1-16-all-fractions_k255_345380 Species: Saccharopolyspora erythraea (50%)	2	2316 bp	68.61	0.65	63.08
A1-16-all-fractions_k255_348307 Species: Bacillus nealsonii (50%)	2	1511 bp	70.09	0.40	97.09
A1-16-all-fractions_k255_5035827 Species: Saccharomonospora marina (50%)	2	3323 bp	73.79	0.81	99.58
A1-16-all-fractions_k255_351813 Species: Catenulispora acidiphila (50%)	2	1875 bp	72.32	1.52	93.92
A1-16-all-fractions_k255_5049183 Species: Kutzneria albida (50%)	2	3499 bp	70.05	2.01	81.88
A1-16-all-fractions_k255_3892096 Species: Amycolatopsis mediterranei (50%)	2	2008 bp	66.73	0.90	85.01
A1-16-all-fractions_k255_5056471 Species: Streptomyces cattleya (100%)	2	2095 bp	70.26	0.64	88.78
A1-16-all-fractions_k255_370163 Species: RBG_13_OP8X_37_8_curated (50%)	2	2510 bp	70.72	0.00	99.92
A1-16-all-fractions_k255_2775918 Species: R_Saccharibacteria_47_12 (50%)	2	1785 bp	65.55	1.68	91.43
A1-16-all-fractions_k255_5061659 Species: Tetrasphaera japonica (50%)	2	2414 bp	71.21	0.68	97.43
A1-16-all-fractions_k255_2793522 Species: Criblamydia sequanensis (50%)	2	1896 bp	64.29	0.00	68.35
A1-16-all-fractions_k255_378860 Species: marine gamma proteobacterium HTCC2148 (50%)	2	1528 bp	72.71	1.18	97.19

Displaying items 1001-1050 of 1126 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (A1-16-all-fractions_metab_12) and add all its contigs / scaffolds to the organism you choose below

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A1-16-all-fractions_metab_12

wsip-metawrap-drep-bins_Actinobacteria_71_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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