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A1-18-all-fractions_k255_1204827

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_1204827_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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671..1120
-----------------
DNA (450bp)
protein (150aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6L979_9RHOB
endoribonuclease L-PSP
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
A1-18-all-fractions_k255_1204827_2
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1373..1591
-----------------
DNA (219bp)
protein (73aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TVY7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE10625.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
A1-18-all-fractions_k255_1204827_3
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1792..2265)
-----------------
DNA (474bp)
protein (158aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00036BFF40
Uncharacterized protein {ECO:0000313|EMBL:EIM24502.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
A1-18-all-fractions_k255_1204827_4
unknown

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comp(2579..2854)
-----------------
DNA (276bp)
protein (92aa)

This feature has no annotations

A1-18-all-fractions_k255_1204827_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3238..4608
-----------------
DNA (1371bp)
protein (457aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Rhodovulum sp. PH10 RepID=J5PNX1_9RHOB
MiaB-like tRNA modifying protein YliG
A1-18-all-fractions_k255_1204827_6
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4621..5901)
-----------------
DNA (1281bp)
protein (427aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:CKH98137.1}; EC=2.6.1.62 {ECO:0000313|EMBL:CKH98137.1};; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
UPI0003D67A8A related cluster n=1 Tax=unknown RepID=UPI0003D67A8A
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
A1-18-all-fractions_k255_1204827_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5952..7133
-----------------
DNA (1182bp)
protein (394aa)
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UDS5_9RHOB
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:EJW11656.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
A1-18-all-fractions_k255_1204827_8
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7130..7819
-----------------
DNA (690bp)
protein (230aa)
dethiobiotin synthase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ERM0_METSB
A1-18-all-fractions_k255_1204827_9
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7832..8809)
-----------------
DNA (978bp)
protein (326aa)
Quinone oxidoreductase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UEU2_9RHOB
Quinone oxidoreductase {ECO:0000313|EMBL:EJW11659.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
alcohol dehydrogenase
A1-18-all-fractions_k255_1204827_10
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8886..9617)
-----------------
DNA (732bp)
protein (244aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T8K8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE02785.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
A1-18-all-fractions_k255_1204827_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9618..10340)
-----------------
DNA (723bp)
protein (241aa)
phosphatidylcholine synthase (EC:2.7.8.24)
Phosphatidylcholine synthase {ECO:0000256|PIRNR:PIRNR000851}; Short=PC synthase {ECO:0000256|PIRNR:PIRNR000851};; Short=PCS {ECO:0000256|PIRNR:PIRNR000851};; EC=2.7.8.24 {ECO:0000256|PIRNR:PIRNR000851};; CDP-diglyceride-choline O-phosphatidyltransferase {ECO:0000256|PIRNR:PIRNR000851}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Phosphatidylcholine synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLQ3_NITHX
A1-18-all-fractions_k255_1204827_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10445..11644
-----------------
DNA (1200bp)
protein (400aa)
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PM02_9RHOB
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:EJW11662.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
2-octaprenyl-6-methoxyphenyl hydroxylase
A1-18-all-fractions_k255_1204827_13
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11738..12781
-----------------
DNA (1044bp)
protein (348aa)
Citrate lyase beta subunit n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I089_AZOC5
citrate lyase subunit beta
Citrate lyase beta subunit {ECO:0000313|EMBL:BAF87225.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
A1-18-all-fractions_k255_1204827_14
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12789..13157
-----------------
DNA (369bp)
protein (123aa)
DNA-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036ADA18
DNA-binding protein {ECO:0000313|EMBL:KJC53672.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
A1-18-all-fractions_k255_1204827_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13408..14067)
-----------------
DNA (660bp)
protein (220aa)
invasion associated locus B n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B62FDD
invasion associated locus B
Invasion associated locus B family protein {ECO:0000313|EMBL:ACF01450.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
A1-18-all-fractions_k255_1204827_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14136..14939)
-----------------
DNA (804bp)
protein (268aa)
Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I973_9BRAD
Branched-chain amino acid transport system substrate-binding protein {ECO:0000313|EMBL:ERF80060.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
invasion associated locus B
A1-18-all-fractions_k255_1204827_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15167..17056
-----------------
DNA (1890bp)
protein (630aa)
Possible binding protein component of ABC transporter n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N6F1_RHOPA
Bicyclomycin resistance protein {ECO:0000313|EMBL:KIZ45515.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
family 5 extracellular solute-binding protein
A1-18-all-fractions_k255_1204827_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17164..18423
-----------------
DNA (1260bp)
protein (420aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LF06_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11673.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
signal peptide
A1-18-all-fractions_k255_1204827_19
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18465..19121
-----------------
DNA (657bp)
protein (219aa)
2-hydroxychromene-2-carboxylate isomerase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UEV4_9RHOB
2-hydroxychromene-2-carboxylate isomerase {ECO:0000313|EMBL:EJW11674.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
DSBA oxidoreductase
A1-18-all-fractions_k255_1204827_20
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19162..22677)
-----------------
DNA (3516bp)
protein (1172aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Transcription-repair-coupling factor n=1 Tax=Rhodovulum sp. PH10 RepID=J5PM31_9RHOB
transcription-repair coupling factor
A1-18-all-fractions_k255_1204827_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22674..23051)
-----------------
DNA (378bp)
protein (126aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X127_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC70310.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
protein of unassigned function
A1-18-all-fractions_k255_1204827_22
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23104..25203
-----------------
DNA (2100bp)
protein (700aa)
ATP-dependent DNA helicase RecG n=1 Tax=Rhodovulum sp. PH10 RepID=J6UEW6_9RHOB
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EJW11689.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
DEAD/DEAH box helicase-like protein
A1-18-all-fractions_k255_1204827_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25238..26023)
-----------------
DNA (786bp)
protein (262aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P643_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38062.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
A1-18-all-fractions_k255_1204827_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26107..27933)
-----------------
DNA (1827bp)
protein (609aa)
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136Z2_RHOPS
A1-18-all-fractions_k255_1204827_25
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28062..29369)
-----------------
DNA (1308bp)
protein (436aa)
N-acetylglucosamine-1-phosphate uridyltransferase n=1 Tax=Xanthobacteraceae RepID=UPI000366D8D4
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
A1-18-all-fractions_k255_1204827_26
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29642..30022
-----------------
DNA (381bp)
protein (127aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UEX4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11699.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
A1-18-all-fractions_k255_1204827_27
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29988..31622)
-----------------
DNA (1635bp)
protein (545aa)
Glycoside hydrolase, family 17 n=2 Tax=Oligotropha carboxidovorans RepID=B6JFB4_OLICO
putative glycoside hydrolase
Putative glycoside hydrolase {ECO:0000313|EMBL:AEI06524.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
A1-18-all-fractions_k255_1204827_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31873..32340
-----------------
DNA (468bp)
protein (156aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MW6_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ06718.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Displaying 28 items

View Taxonomy