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A1-18-all-fractions_k255_3096942

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Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_3096942_1
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..784
DNA (783bp) protein (261aa)
Bacteriophage integrase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WWL5_9BRAD
Integrase {ECO:0000313|EMBL:KJC62182.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
intA; site-specific integrase
A1-18-all-fractions_k255_3096942_2
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1013..1210
DNA (198bp) protein (66aa)
Protein translocase subunit SecE n=1 Tax=Rhodovulum sp. PH10 RepID=J6LAM6_9RHOB
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
secE; preprotein translocase subunit SecE
A1-18-all-fractions_k255_3096942_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1224..1757
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Rhodovulum sp. PH10 RepID=J5PFY0_9RHOB
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
transcription antitermination protein
A1-18-all-fractions_k255_3096942_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1922..2350
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=2 Tax=Oligotropha carboxidovorans RepID=RL11_OLICO
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rplK; 50S ribosomal protein L11
A1-18-all-fractions_k255_3096942_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2356..3054
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCB3_9RHOB
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rplA; 50S ribosomal protein L1
A1-18-all-fractions_k255_3096942_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3230..4429)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XRC5_SORCE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
A1-18-all-fractions_k255_3096942_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4621..5148)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NW95_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32734.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
A1-18-all-fractions_k255_3096942_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5730..6248
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UF31_9RHOB
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rplJ; 50S ribosomal protein L10
A1-18-all-fractions_k255_3096942_9
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6293..6667
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Rhodovulum sp. PH10 RepID=J6J972_9RHOB
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rplL; 50S ribosomal protein L7/L12
A1-18-all-fractions_k255_3096942_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6875..11002
DNA (4128bp) protein (1376aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
DNA-directed RNA polymerase subunit beta n=66 Tax=Bradyrhizobium RepID=RPOB_BRADU
A1-18-all-fractions_k255_3096942_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11079..15344
DNA (4266bp) protein (1422aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Rhodovulum sp. PH10 RepID=J6LH80_9RHOB
A1-18-all-fractions_k255_3096942_12
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15697..18630
DNA (2934bp) protein (978aa)
Membrane carboxypeptidase/penicillin-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKR5_9RHIZ
Membrane carboxypeptidase/penicillin-binding protein {ECO:0000313|EMBL:EIM24557.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
glycosyl transferase family protein
A1-18-all-fractions_k255_3096942_13
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18638..19687
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J4A4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFG69718.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
A1-18-all-fractions_k255_3096942_14
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20343..21602
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003734879
ABC transporter permease {ECO:0000313|EMBL:KJC46859.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
major facilitator transporter
A1-18-all-fractions_k255_3096942_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21759..23528
DNA (1770bp) protein (590aa)
ABC transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036E1604
ABC transporter subfamily B {ECO:0000313|EMBL:ERF80639.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ABC transporter-like protein
A1-18-all-fractions_k255_3096942_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23919..24290
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Rhodovulum sp. PH10 RepID=J6J965_9RHOB
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rpsL; 30S ribosomal protein S12
A1-18-all-fractions_k255_3096942_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24405..24875
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=Oligotropha carboxidovorans RepID=RS7_OLICO
rpsG; 30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
A1-18-all-fractions_k255_3096942_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24907..26979
DNA (2073bp) protein (691aa)
Elongation factor G n=1 Tax=Rhodovulum sp. PH10 RepID=J6LH73_9RHOB
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
fusA; elongation factor G
A1-18-all-fractions_k255_3096942_19
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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27080..28288
DNA (1209bp) protein (403aa)
elongation factor Tu n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036CDF24
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
A1-18-all-fractions_k255_3096942_20
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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28398..28706
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=2 Tax=Xanthobacteraceae RepID=RS10_AZOC5
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
A1-18-all-fractions_k255_3096942_21
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28741..29493
DNA (753bp) protein (251aa)
50S ribosomal protein L3 n=1 Tax=Rhodovulum sp. PH10 RepID=J6J957_9RHOB
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rplC; 50S ribosomal protein L3
A1-18-all-fractions_k255_3096942_22
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


29495..30115
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UG29_9RHOB
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rplD; 50S ribosomal protein L4
A1-18-all-fractions_k255_3096942_23
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


30112..30411
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HJN3_9BRAD
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
A1-18-all-fractions_k255_3096942_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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30424..31257
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=RL2_RHOP2
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000255|HAMAP-Rule:MF_01320}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
A1-18-all-fractions_k255_3096942_25
bacterium YEK0313, Bacteria

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31272..31619
DNA (348bp) protein (116aa)
30S ribosomal protein S19 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EE6A2A
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
30S ribosomal protein S19
A1-18-all-fractions_k255_3096942_26
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


31630..32013
DNA (384bp) protein (128aa)
50S ribosomal protein L22 n=1 Tax=Rhodovulum sp. PH10 RepID=J6J949_9RHOB
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rplV; 50S ribosomal protein L22
A1-18-all-fractions_k255_3096942_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32023..32721
DNA (699bp) protein (233aa)
30S ribosomal protein S3 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=RS3_RHOPB
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000255|HAMAP-Rule:MF_01309}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
A1-18-all-fractions_k255_3096942_28
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32758..33171
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Rhodovulum sp. PH10 RepID=J6LH65_9RHOB
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
50S ribosomal protein L16
A1-18-all-fractions_k255_3096942_29
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


33187..33465
DNA (279bp) protein (93aa)
50S ribosomal protein L29 n=1 Tax=Rhodovulum sp. PH10 RepID=J5PPQ9_9RHOB
50S ribosomal protein L29
Tax=RBG_16_Alphaproteobacteria_64_48_curated
A1-18-all-fractions_k255_3096942_30
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


33472..33720
DNA (249bp) protein (83aa)
30S ribosomal protein S17 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAD5_9BRAD
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rpsQ; 30S ribosomal protein S17
Displaying items 1-30 of 73 in total

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