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H2-16-all-fractions_k255_4713457

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_4713457_1
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..799
DNA (798bp) protein (266aa)
Elongation factor Ts n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S276_9SPHN
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
tsf; elongation factor Ts
H2-16-all-fractions_k255_4713457_2
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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889..1611
DNA (723bp) protein (241aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
Uridylate kinase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJT2_9SPHN
uridylate kinase
H2-16-all-fractions_k255_4713457_3
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1615..2175
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) RepID=F8ETN8_ZYMMT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
ribosome recycling factor
H2-16-all-fractions_k255_4713457_4

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2172..2921
DNA (750bp) protein (250aa)
Putative undecaprenyl diphosphate synthase n=1 Tax=uncultured organism RepID=T1W8Q0_9ZZZZ
Putative undecaprenyl diphosphate synthase {ECO:0000313|EMBL:AGU10500.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
undecaprenyl pyrophosphate synthase
H2-16-all-fractions_k255_4713457_5
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2918..3544
DNA (627bp) protein (209aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=579138 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 /; NBRC 13757 / NCIMB 11200 / NRRL B-4491).;"
Phosphatidate cytidylyltransferase n=1 Tax=Zymomonas mobilis subsp. mobilis ATCC 29191 RepID=I6YTG7_ZYMMB
phosphatidate cytidylyltransferase
H2-16-all-fractions_k255_4713457_6
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3541..4701
DNA (1161bp) protein (387aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A3F605
1-deoxy-D-xylulose 5-phosphate reductoisomerase
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
H2-16-all-fractions_k255_4713457_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4705..5823
DNA (1119bp) protein (373aa)
peptidase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488FF1
peptidase
Peptidase {ECO:0000313|EMBL:AJP71613.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
H2-16-all-fractions_k255_4713457_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5902..8565
DNA (2664bp) protein (888aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000375AD62
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
yaeT; outer membrane protein YaeT
H2-16-all-fractions_k255_4713457_9
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8565..9155
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H0H7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB09776.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
outer membrane chaperone Skp
H2-16-all-fractions_k255_4713457_10
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9164..9640
DNA (477bp) protein (159aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
3-hydroxyacyl-ACP dehydratase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488FEE
(3R)-hydroxymyristoyl-ACP dehydratase
H2-16-all-fractions_k255_4713457_11
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(9644..11470)
DNA (1827bp) protein (609aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B63DBD
Uncharacterized protein {ECO:0000313|EMBL:KIF23358.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
TonB-dependent receptor
H2-16-all-fractions_k255_4713457_12
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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11768..12301
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AM00_IGNAJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH50007.1}; TaxID=945713 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 /; Mat9-16).;"
H2-16-all-fractions_k255_4713457_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12401..12628
DNA (228bp) protein (76aa)
50S ribosomal protein L31 n=2 Tax=Novosphingobium RepID=F6ILL8_9SPHN
50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
H2-16-all-fractions_k255_4713457_14
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12635..13177
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UF46_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP90503.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
acetyltransferase
H2-16-all-fractions_k255_4713457_15
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13163..14353)
DNA (1191bp) protein (397aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5247C
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABS69931.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
H2-16-all-fractions_k255_4713457_16
Asticcacaulis excentricus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14431..16593)
DNA (2163bp) protein (721aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003627725
tonb-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADU15142.1}; Flags: Precursor;; TaxID=573065 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 /; CB 48).;"
H2-16-all-fractions_k255_4713457_17
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16731..17606)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W2W7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM99010.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
H2-16-all-fractions_k255_4713457_18
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17711..19639)
DNA (1929bp) protein (643aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDR6_9SPHN
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
H2-16-all-fractions_k255_4713457_19
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19639..20019)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4NWG0_9CAUL
BlaI family transcriptional regulator {ECO:0000313|EMBL:KGB52987.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
H2-16-all-fractions_k255_4713457_20
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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20377..21480
DNA (1104bp) protein (368aa)
lytic transglycosylase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B555
Uncharacterized protein {ECO:0000313|EMBL:AHE54060.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
lytic murein transglycosylase
H2-16-all-fractions_k255_4713457_21
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21523..22701
DNA (1179bp) protein (393aa)
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ABQ66851.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ABQ66851.1};; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V3I5_SPHWW
H2-16-all-fractions_k255_4713457_22
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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22698..23324
DNA (627bp) protein (209aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
tmk; dTMP kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Sphingobium indicum B90A RepID=I5B8M2_9SPHN
H2-16-all-fractions_k255_4713457_23
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23321..24292
DNA (972bp) protein (324aa)
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:ABQ66853.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABQ66853.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036BB5EC
H2-16-all-fractions_k255_4713457_24
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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24316..25884
DNA (1569bp) protein (523aa)
methionyl-tRNA synthetase (EC:6.1.1.10)
UPI0003D008FA related cluster n=1 Tax=unknown RepID=UPI0003D008FA
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
H2-16-all-fractions_k255_4713457_25
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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25881..26669
DNA (789bp) protein (263aa)
LuxR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B54F
Hydrolase, TatD family {ECO:0000313|EMBL:EJL26946.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
Mg-dependent DNase
H2-16-all-fractions_k255_4713457_26
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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26705..27430
DNA (726bp) protein (242aa)
Beta-lactamase domain-containing protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RWA7_9SPHN
beta-lactamase domain-containing protein
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:AGH47856.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_4713457_27
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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27427..28017
DNA (591bp) protein (197aa)
putative aspartyl protease n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B54D
putative aspartyl protease
Putative aspartyl protease {ECO:0000313|EMBL:AGH47857.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_4713457_28
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28084..28836
DNA (753bp) protein (251aa)
mazG; nucleoside triphosphate hydrolase (EC:3.6.1.19)
nucleotide pyrophosphohydrolase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB25
DNA, contig: SP614 {ECO:0000313|EMBL:GAN12971.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
H2-16-all-fractions_k255_4713457_29
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28815..30059)
DNA (1245bp) protein (415aa)
GTPase HflX n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036607BF
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
GTPase HflX
H2-16-all-fractions_k255_4713457_30
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30119..30610)
DNA (492bp) protein (164aa)
RNA-binding protein Hfq n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000302D624
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
RNA-binding protein Hfq
Displaying items 1-30 of 45 in total

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