ggKbase home page

H3-16-all-fractions_k255_3178077

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-16-all-fractions_k255_3178077_1
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..132
DNA (132bp) protein (44aa)
Blue (Type 1) copper domain protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1SYH1_9BURK
blue (type 1) copper domain-containing protein
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:EDT43602.1}; Flags: Precursor;; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria MEX-5.;"
H3-16-all-fractions_k255_3178077_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(422..574)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUP5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY22283.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
H3-16-all-fractions_k255_3178077_3
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(761..1303)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746B46
ErfK/YbiS/YcfS/YnhG family protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
H3-16-all-fractions_k255_3178077_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(1557..3428)
DNA (1872bp) protein (624aa)
hypothetical protein id=14425464 bin=bin1_lowGC species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
H3-16-all-fractions_k255_3178077_5
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3585..4352)
DNA (768bp) protein (256aa)
xth; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PDZ1_9DELT
Exodeoxyribonuclease III {ECO:0000313|EMBL:KFA89899.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
H3-16-all-fractions_k255_3178077_6
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(4453..5829)
DNA (1377bp) protein (459aa)
Ysh1p: subunit of polyadenylation factor I, putative n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017466CC
Predicted exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:CCG91385.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
ysh1; exonuclease of the beta-lactamase fold involved in RNA processing
H3-16-all-fractions_k255_3178077_7
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(5937..6971)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HK78_PYRSN
putative peptidase M19 family protein
Uncharacterized protein {ECO:0000313|EMBL:AEC52566.1}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA2).;"
H3-16-all-fractions_k255_3178077_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6968..8230)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYF8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20499.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
H3-16-all-fractions_k255_3178077_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(8327..9280)
DNA (954bp) protein (318aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Quinolinate synthetase complex, A subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZL3_9BACT
quinolinate synthetase
H3-16-all-fractions_k255_3178077_10
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9302..10129
DNA (828bp) protein (276aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
Pyrroline-5-carboxylate reductase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JHB6_ANAD2
pyrroline-5-carboxylate reductase
H3-16-all-fractions_k255_3178077_11
uncultured verrucomicrobium HF0500_18J03, Verrucomicrobia, Bacteria

Not on your lists

comp(10133..11068)
DNA (936bp) protein (312aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=723599 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured verrucomicrobium HF0500_18J03.;"
Shikimate dehydrogenase n=1 Tax=uncultured verrucomicrobium HF0500_18J03 RepID=E7C598_9BACT
shikimate dehydrogenase
H3-16-all-fractions_k255_3178077_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

11076..11543
DNA (468bp) protein (156aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glutamine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9B1_9BACT
ribonuclease G
Displaying 12 items

View Taxonomy