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H3-18-all-fractions_k255_6341975

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-18-all-fractions_k255_6341975_1
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..282
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00036525CD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV93954.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
H3-18-all-fractions_k255_6341975_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(389..1135)
DNA (747bp) protein (249aa)
Putative amidophosphoribosyltransferase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF28_CHLTF
Predicted amidophosphoribosyltransferase {ECO:0000313|EMBL:CDM66152.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative amidophosphoribosyltransferase
H3-18-all-fractions_k255_6341975_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1268..1636)
DNA (369bp) protein (123aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ15_KORVE
Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:CDM66151.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
TraR/DksA family transcriptional regulator
H3-18-all-fractions_k255_6341975_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1727..2191)
DNA (465bp) protein (155aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00094203};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEZ8_CHLTF
hypothetical protein
H3-18-all-fractions_k255_6341975_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(2231..3196)
DNA (966bp) protein (322aa)
Sigma-54 interaction domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIK9_CHLTF
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM66149.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
sigma-54 interaction domain-containing protein
H3-18-all-fractions_k255_6341975_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3193..3693)
DNA (501bp) protein (167aa)
Ribosomal silencing factor RsfS n=2 Tax=Blautia RepID=C0CHX8_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
iojap-related protein
H3-18-all-fractions_k255_6341975_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3650..4375)
DNA (726bp) protein (242aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244, ECO:0000256|SAAS:SAAS00086517};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE34_CHLTF
H3-18-all-fractions_k255_6341975_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(4372..5424)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003665866
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
obgE; GTPase ObgE
H3-18-all-fractions_k255_6341975_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(5598..5903)
DNA (306bp) protein (102aa)
50S ribosomal protein L27 n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9R158_NOSS7
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L27
H3-18-all-fractions_k255_6341975_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(5979..6290)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LQ07_DESBD
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L21
H3-18-all-fractions_k255_6341975_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(6392..7777)
DNA (1386bp) protein (462aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:CDM66143.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CDM66143.1};; EC=6.4.1.2 {ECO:0000313|EMBL:CDM66143.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UFB8_MYXSD
acetyl-CoA carboxylase, biotin carboxylase
H3-18-all-fractions_k255_6341975_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7865..8551)
DNA (687bp) protein (229aa)
Biotin carboxyl carrier protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILG1_KORVE
Biotin carboxyl carrier protein {ECO:0000313|EMBL:CDM66142.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
biotin carboxyl carrier protein
H3-18-all-fractions_k255_6341975_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(8749..9384)
DNA (636bp) protein (212aa)
50S ribosomal protein L17 n=28 Tax=Francisella RepID=RL17_FRATF
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L17
H3-18-all-fractions_k255_6341975_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9472..10533)
DNA (1062bp) protein (354aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NV85_GRAMM
DNA-directed RNA polymerase subunit alpha
H3-18-all-fractions_k255_6341975_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(10643..11284)
DNA (642bp) protein (214aa)
30S ribosomal protein S4 n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P911_DEFDS
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsD; 30S ribosomal protein S4
H3-18-all-fractions_k255_6341975_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(11460..11861)
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000367E825
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
30S ribosomal protein S11
H3-18-all-fractions_k255_6341975_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(11985..12368)
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4B344
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsM; 30S ribosomal protein S13
H3-18-all-fractions_k255_6341975_18
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(12486..12599)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RL36_SOLUE
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
H3-18-all-fractions_k255_6341975_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12635..12856)
DNA (222bp) protein (74aa)
translation initiation factor IF-1 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B76C4B
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
translation initiation factor IF-1
H3-18-all-fractions_k255_6341975_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12966..13757)
DNA (792bp) protein (264aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Methionine aminopeptidase n=1 Tax=Eggerthella sp. CAG:368 RepID=R7BQU7_9ACTN
methionine aminopeptidase
H3-18-all-fractions_k255_6341975_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13856..14509)
DNA (654bp) protein (218aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Adenylate kinase n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CBZ8_9FIRM
adenylate kinase
H3-18-all-fractions_k255_6341975_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(14585..16003)
DNA (1419bp) protein (473aa)
hypothetical protein n=2 Tax=Aminicenantes RepID=UPI000361AA1F
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
protein translocase subunit SecY/sec61 alpha
H3-18-all-fractions_k255_6341975_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(16256..16747)
DNA (492bp) protein (164aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 id=12555560 bin=CNBR_ACIDO species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplO; 50S ribosomal protein L15
H3-18-all-fractions_k255_6341975_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(16848..17057)
DNA (210bp) protein (70aa)
50S ribosomal protein L30 n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F624_ACIC5
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpmD; 50S ribosomal protein L30
H3-18-all-fractions_k255_6341975_25
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(17138..17644)
DNA (507bp) protein (169aa)
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=12555562 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S5
H3-18-all-fractions_k255_6341975_26
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(17667..18086)
DNA (420bp) protein (140aa)
50S ribosomal protein L18 n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q1L1_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L18
H3-18-all-fractions_k255_6341975_27
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(18182..18742)
DNA (561bp) protein (187aa)
50S ribosomal protein L6 n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000380CC42
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplF; 50S ribosomal protein L6
H3-18-all-fractions_k255_6341975_28
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(18839..19231)
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RS8_SOLUE
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsH; 30S ribosomal protein S8
H3-18-all-fractions_k255_6341975_29
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists


comp(19367..19552)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 n=1 Tax=Streptococcus didelphis RepID=UPI0003613A2C
rpsN; 30S ribosomal protein S14
Tax=RBG_16_RIF03_38_10_curated
H3-18-all-fractions_k255_6341975_30
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(19640..20182)
DNA (543bp) protein (181aa)
50S ribosomal protein L5 n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=RL5_ACIC5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplE; 50S ribosomal protein L5
Displaying items 1-30 of 44 in total

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