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S1-16-all-fractions_k255_5528114

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1-16-all-fractions_k255_5528114_1
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..451)
-----------------
DNA (450bp)
protein (150aa)
HNH endonuclease n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLN6_NOCSJ
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:ABL82721.1}; Flags: Precursor;; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
S1-16-all-fractions_k255_5528114_2
unknown

Not on your lists

702..860
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

S1-16-all-fractions_k255_5528114_3
unknown

Not on your lists

comp(1030..2013)
-----------------
DNA (984bp)
protein (328aa)

This feature has no annotations

S1-16-all-fractions_k255_5528114_4
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2006..2503)
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI00036B6B5E
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:AJR18178.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
ECF subfamily RNA polymerase sigma-24 subunit
S1-16-all-fractions_k255_5528114_5
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2580..3956)
-----------------
DNA (1377bp)
protein (459aa)
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AIY19448.1}; EC=1.6.99.3 {ECO:0000313|EMBL:AIY19448.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
Putative reductase n=1 Tax=Gordonia sputi NBRC 100414 RepID=H5U7J5_9ACTO
CoA-disulfide reductase
S1-16-all-fractions_k255_5528114_6
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3953..5005)
-----------------
DNA (1053bp)
protein (351aa)
Aldo/keto reductase n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SF18_NOCSJ
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABL80403.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
S1-16-all-fractions_k255_5528114_7
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5109..6407
-----------------
DNA (1299bp)
protein (433aa)
Cytochrome P450 165B3 protein n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UY14_9ACTO
Cytochrome P450 {ECO:0000313|EMBL:KJR07530.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
cytochrome P450
S1-16-all-fractions_k255_5528114_8
Knoellia aerolata, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6473..7405
-----------------
DNA (933bp)
protein (311aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI000372225D
Uncharacterized protein {ECO:0000313|EMBL:KGN40448.1}; TaxID=1385519 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia aerolata DSM 18566.;"
hypothetical protein
S1-16-all-fractions_k255_5528114_9
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7402..8004)
-----------------
DNA (603bp)
protein (201aa)
Methyltransferase small n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0U7_9ACTO
Methyltransferase small {ECO:0000313|EMBL:EON25196.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
methyltransferase small
S1-16-all-fractions_k255_5528114_10
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7997..8833)
-----------------
DNA (837bp)
protein (279aa)
tRNA pseudouridine synthase A (EC:4.2.1.70)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
tRNA pseudouridine synthase A n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SNI4_NOCSJ
S1-16-all-fractions_k255_5528114_11
unknown

Not on your lists

8905..9405
-----------------
DNA (501bp)
protein (167aa)

This feature has no annotations

S1-16-all-fractions_k255_5528114_12
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9499..9870
-----------------
DNA (372bp)
protein (124aa)
ArsR family transcriptional regulator n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0P7_9ACTO
ArsR family transcriptional regulator {ECO:0000313|EMBL:EON25192.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
S1-16-all-fractions_k255_5528114_13
Gordonia terrae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9867..10382
-----------------
DNA (516bp)
protein (172aa)
Uncharacterized protein n=2 Tax=Gordonia RepID=J9RZH2_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EON31867.1}; TaxID=1316928 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia terrae C-6.;"
S1-16-all-fractions_k255_5528114_14
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10382..10960
-----------------
DNA (579bp)
protein (193aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. CF8 RepID=R7Y1S0_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EON25190.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
S1-16-all-fractions_k255_5528114_15
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10957..11556
-----------------
DNA (600bp)
protein (200aa)
Dihydrofolate reductase n=1 Tax=Streptomyces davawensis JCM 4913 RepID=K4QV79_9ACTO
dihydrofolate reductase
Dihydrofolate reductase {ECO:0000313|EMBL:CCK24913.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
S1-16-all-fractions_k255_5528114_16
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11607..12566
-----------------
DNA (960bp)
protein (320aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
2-dehydropantoate 2-reductase n=1 Tax=Gordonia polyisoprenivorans RepID=UPI000365A2BE
putative 2-dehydropantoate 2-reductase
S1-16-all-fractions_k255_5528114_17
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12639..13217)
-----------------
DNA (579bp)
protein (193aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI000368DDC5
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000255|HAMAP-Rule:MF_01368}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
S1-16-all-fractions_k255_5528114_18
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13437..14453)
-----------------
DNA (1017bp)
protein (339aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=RPOA_NOCSJ
S1-16-all-fractions_k255_5528114_19
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(14573..15181)
-----------------
DNA (609bp)
protein (203aa)
30S ribosomal protein S4 n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UY07_9ACTO
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
rpsD; 30S ribosomal protein S4
S1-16-all-fractions_k255_5528114_20
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(15208..15603)
-----------------
DNA (396bp)
protein (132aa)
30S ribosomal protein S11 n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0R8_9ACTO
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
30S ribosomal protein S11
S1-16-all-fractions_k255_5528114_21
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(15686..16060)
-----------------
DNA (375bp)
protein (125aa)
30S ribosomal protein S13 n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0W7_9ACTO
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
S1-16-all-fractions_k255_5528114_22
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16225..16338)
-----------------
DNA (114bp)
protein (38aa)
50S ribosomal protein L36 n=4 Tax=Mobiluncus curtisii RepID=D6ZIT2_MOBCV
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=887899 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii subsp. holmesii ATCC 35242.;"
S1-16-all-fractions_k255_5528114_23
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16370..16591)
-----------------
DNA (222bp)
protein (74aa)
Translation initiation factor IF-1 n=2 Tax=Nocardioidaceae RepID=IF1_NOCSJ
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000255|HAMAP-Rule:MF_00075}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
S1-16-all-fractions_k255_5528114_24
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16813..19173)
-----------------
DNA (2361bp)
protein (787aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. CF8 RepID=R7Y1Q7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EON25180.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
S1-16-all-fractions_k255_5528114_25
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19170..20351)
-----------------
DNA (1182bp)
protein (394aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0R1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EON25179.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
S1-16-all-fractions_k255_5528114_26
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20356..21327)
-----------------
DNA (972bp)
protein (324aa)
ATPase n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0W2_9ACTO
ATPase {ECO:0000313|EMBL:EON25178.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
S1-16-all-fractions_k255_5528114_27
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21371..27640)
-----------------
DNA (6270bp)
protein (2090aa)
Fibronectin-related protein n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0N1_9ACTO
Fibronectin-related protein {ECO:0000313|EMBL:EON25177.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
S1-16-all-fractions_k255_5528114_28
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27835..28608
-----------------
DNA (774bp)
protein (258aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. CF8 RepID=R7Y0S6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EON25176.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
Displaying 28 items

View Taxonomy