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Ig3397_v2_scaffold_3483

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_3483_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(1..882)
DNA (882bp) protein (294aa)
Protein translocase subunit SecY id=3834797 bin=GWB1_CP_36_13 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(887..1333)
DNA (447bp) protein (149aa)
50S ribosomal protein L15 id=3834796 bin=GWB1_CP_36_13 species=Eubacterium eligens genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rplO; 50S ribosomal protein L15
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_3
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(1350..1538)
DNA (189bp) protein (63aa)
50S ribosomal protein L30 id=3834795 bin=GWB1_CP_36_13 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rpmD; 50S ribosomal protein l30; K02907 large subunit ribosomal protein L30
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_4
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(1553..2077)
DNA (525bp) protein (175aa)
30S ribosomal protein S5 id=3834794 bin=GWB1_CP_36_13 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_5
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(2089..2445)
DNA (357bp) protein (119aa)
50S ribosomal protein L18 id=3834793 bin=GWB1_CP_36_13 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_6
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(2464..3000)
DNA (537bp) protein (179aa)
50S ribosomal protein L6 id=3834792 bin=GWB1_CP_36_13 species=Eubacterium hallii genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(3028..3426)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 id=3834791 bin=GWB1_CP_36_13 species=Anaerofustis stercorihominis genus=Anaerofustis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_8
Treponema saccharophilum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists


comp(3436..3621)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z id=3834790 bin=GWB1_CP_36_13 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=907348 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema saccharophilum DSM 2985.;"
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
Ig3397_v2_scaffold_3483_9
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(3641..4180)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 id=3834789 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(4196..4522)
DNA (327bp) protein (109aa)
50S ribosomal protein L24 id=3834788 bin=GWB1_CP_36_13 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_11
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(4542..4910)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=3834787 bin=GWB1_CP_36_13 species=Thermovirga lienii genus=Thermovirga taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_12
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(4914..5207)
DNA (294bp) protein (98aa)
30S ribosomal protein S17 id=3834786 bin=GWB1_CP_36_13 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_13
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(5209..5427)
DNA (219bp) protein (73aa)
50S ribosomal protein L29 id=3834785 bin=GWB1_CP_36_13 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_14
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(5440..5856)
DNA (417bp) protein (139aa)
50S ribosomal protein L16 id=3834784 bin=GWB1_CP_36_13 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
50S ribosomal protein L16
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_15
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(5897..6727)
DNA (831bp) protein (277aa)
30S ribosomal protein S3 id=3834783 bin=GWB1_CP_36_13 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
SSU ribosomal protein S3P
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_16
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(6728..7072)
DNA (345bp) protein (115aa)
50S ribosomal protein L22 id=3834782 bin=GWB1_CP_36_13 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_17
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(7085..7363)
DNA (279bp) protein (93aa)
Ribosomal protein S19 id=3834781 bin=GWB1_CP_36_13 species=Desulfobacter postgatei genus=Desulfobacter taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_18
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(7380..8210)
DNA (831bp) protein (277aa)
50S ribosomal protein L2 id=3834780 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
ribosomal protein L2; K02886 large subunit ribosomal protein L2
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_19
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(8243..8536)
DNA (294bp) protein (98aa)
50S ribosomal protein L23 id=3834779 bin=GWB1_CP_36_13 species=unknown genus=Staphylococcus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3483_20
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(8558..9058)
DNA (501bp) protein (167aa)
50S ribosomal protein L4 id=3834778 bin=GWB1_CP_36_13 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
50S ribosomal protein L4/L1e; K02926 large subunit ribosomal protein L4
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 20 items

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