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13_1_40cm_2_scaffold_1216

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1216_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

3..251
DNA (249bp) protein (83aa)
Fis family two component sigma54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_c
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX id=12554124 bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative NtrC family two-component response regulator
13_1_40cm_2_scaffold_1216_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(282..851)
DNA (570bp) protein (190aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_2_scaffold_1216_3
unknown

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comp(848..1387)
DNA (540bp) protein (180aa)

This feature has no annotations

13_1_40cm_2_scaffold_1216_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1375..1917)
DNA (543bp) protein (181aa)
RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus (strain DSM 12809 / N2460) RepID=D4H1H6_DENA2
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_2_scaffold_1216_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

2662..3804
DNA (1143bp) protein (381aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
amidohydrolase 2
hypothetical protein id=12554123 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_2_scaffold_1216_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3828..4826
DNA (999bp) protein (333aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] id=12554122 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleoside-diphosphate-sugar epimerase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
WcaG; nucleoside-diphosphate-sugar epimerases
13_1_40cm_2_scaffold_1216_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5146..6633
DNA (1488bp) protein (496aa)
TPR repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPN2_9BACT
Tfp pilus assembly protein PilF {ECO:0000313|EMBL:CDM66633.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
13_1_40cm_2_scaffold_1216_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6927..7277
DNA (351bp) protein (117aa)
ComEA protein; K02237 competence protein ComEA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
competence protein ComEA-like protein with helix-hairpin-helix repeat region id=12554119 bin=CNBR_ACIDO species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
helix-hairpin-helix repeat-containing competence protein ComEA
13_1_40cm_2_scaffold_1216_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7332..7922
DNA (591bp) protein (197aa)
id=12554118 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_2_scaffold_1216_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7919..8311
DNA (393bp) protein (131aa)
id=12556046 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_1216_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

8416..9933
DNA (1518bp) protein (506aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
two component sigma54 specific Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=12554116 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
13_1_40cm_2_scaffold_1216_12
unknown

Not on your lists

10580..11539
DNA (960bp) protein (320aa)

This feature has no annotations

Displaying 12 items

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