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berkeley_reactor_200306_planktonic_scaffold_302219_34

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 33649..35919

Top 3 Functional Annotations

Value Algorithm Source
Glycoside hydrolase family 2 sugar binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB03_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 62.9
  • Coverage: 739.0
  • Bit_score: 977
  • Evalue 6.30e-282
Glycoside hydrolase family 2 sugar binding {ECO:0000313|EMBL:EEF63188.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.9
  • Coverage: 739.0
  • Bit_score: 977
  • Evalue 8.90e-282
Beta-galactosidase/beta-glucuronidase similarity KEGG
DB: KEGG
  • Identity: 56.7
  • Coverage: 720.0
  • Bit_score: 845
  • Evalue 6.20e-243

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2271
ATGACTTCCAAATTGAGAGCCTTCTCCTTGCTGGCCGGCGGTTTGCTGCTGGCGGTCAGTGGGTTGACCGTCCGGGCTGATGCGACGGTGAACTGGCAGGCCAAAACGGCGCCGCTCATGACGCCCTGGGCGGCTTCGGTGAGCCCCACCAATGTCTGGCCGGAATATCCGCGGCCGCAGTTGGTGCGCCCGGACTGGGAAAATTTGAACGGGCTGTGGGACTACGCCATCACGCCCGAAACGGTGGCGAAAGCACCGCCCTTTGCCGGGAAAATCCTGGTGCCGTTTCCGGTGGAAGCGGCGTTGTCCGGCGTGATGACCAATCTTAACGAACACAGCAAGCTCTGGTATCATCGCGCGTTTACGGTGCCGGCGGCGTGGCAGGGGCGCCGGGTGCGGCTGCATTTCGGGGCGGTGGACTGGCGTTGCGAAGTGTGGGTGAACGGCCGGGAGGTTGGCCGGCATCAGGGCGGTTACGACGCGTTTACATTCGACATCACCGATGCCCTCCGGCGTCAGGGCGCGCAGGACATGGTGGTTTGCGTCACGGATCCCACCGAGGGCGACCAGCCGCGCGGCAAACAATCGCGCAAACCGGAGGGCATTTTTTACACGTCCACGTCGGGCATCTGGCAGACGGTCTGGCTGGAACCGGTGCCGGACACGTCCATTGACCATTTGAAACTGGTGCCGGATGTGGACACGAAATCACTCCATGTATGGGCGGCGGTCAACCGTTTCTCGGAAGGCCTGAGCATCGAGGCGGTGGCTTTGGCGGACGGAAAAAAAATCGCGAGCGTCACCGGTCCGGCCAATGCGGAACTGGTTTTGAGTCTGCCCGAGCCGCATCTCTGGTCGCCGGACGATCCGTTTTTGTATGGCTTGCAGGTGACGCTCAAGGCGGGCGACAAGACGCTGGATTCGGTGACCAGTTATTTTGGAATGCGGAAAATCGCCCTGCGCAAGGACGATCAGGGCGTCACGCGAATGGCGCTGAACGACCAGTTCATTTTTCAGGTGGGCACGCTGGACCAGGGTTTCTGGCCGGATGGCATCTACACGGCGCCGTCGGATGCGGCCTTGCGGTCCGACATCGAGTTTTTGAAGCAGTCCGGATTCAACTTCACCCGCAAGCACGTCAAGGTGGAGCCGGACCGCTGGTATTACTGGTGCGACAAGCTGGGGCTGATGGTCTGGCAGGACATGCCCAGCGGCAACAATGCCACCGTGGATGGCCGGCGCGATTTTGAAAATGAATTGTGCCGCATGGTGGAGGGACTCCAAAACCATCCGTCCATCGTGGTCTGGGTGCTCTTCAACGAAGGCTGGGGGCAATACGACACCGAATCGTTGACCGGCTGGCTGAAGGAACTGGATCCCTCGCGACTGGTGGACGACGCCAGCGGCTGGACGGACATGCGCGTGGGGGACTTGATTGACATGCACAGTTATCCCGGGCCCGATTCGCCCACGCCGGAATCGCACCGTGCCGCCGTGCTCGGCGAATTTGGCGGCCTGGGCCTGACGGTGAAAAATCATCTGTGGTCGGCCCACAGCTGGGGGTATTTGATGTTGCCGGATGCGAACGAACTGGCGGATCGCTACACGCGCGAATTGAAACAGGTTTGGGAACTGCACCGGCTGCGCGGCCTGAGCGCCGCGGTCTATACGCAAACGGCCGATGTGGAAACCGAGTGCAACGGCCTGCAAACGTATGACCGCCGCGTGGCAAAAATCGCGCCGGACGTTTTGCGGGCGGCGAACCGGGGCAAATTCACCGGCCCGCCCATGAAAATCATCCTGCCGGACGCCTTGCTGGGGCGGGTGAACTGGAAATACACCATGGTGAAACCGGGACCAGCCTGGAATCAGCCCCAGTTTGACGCCGCCGGTTGGCGCGAGGGATTTGGCGGTTTTGGCGCCAGCGGAACGCCGGGCTTGTTTTTCAACACCACCTGGGACACCTCCGACATCTGGCTGCGCCGGGAATTTAATCTGGGACCGGAAGATTTATCGGGGCTCAAGCTGGAGATATTCCACGATGAAGATGCCGAAGTGTATTTGAACGGCGTGCTGGCCGCCGCACTTTCCCATTTCGTCACCGACTATCAGGATGTGGATATTTCCAGCGAGGCGGCGGCGACGCTGCATCCGGGAATCAACACGATCGCCGTGCATTGCCACCAGACAACGGGCGGGCAGGGCGTTGACGTGGGCATCCTGGCGCCGCTGCCGTCCAAGGTGCTGGAAGTGCGGAAACCCGAAAAATAA
PROTEIN sequence
Length: 757
MTSKLRAFSLLAGGLLLAVSGLTVRADATVNWQAKTAPLMTPWAASVSPTNVWPEYPRPQLVRPDWENLNGLWDYAITPETVAKAPPFAGKILVPFPVEAALSGVMTNLNEHSKLWYHRAFTVPAAWQGRRVRLHFGAVDWRCEVWVNGREVGRHQGGYDAFTFDITDALRRQGAQDMVVCVTDPTEGDQPRGKQSRKPEGIFYTSTSGIWQTVWLEPVPDTSIDHLKLVPDVDTKSLHVWAAVNRFSEGLSIEAVALADGKKIASVTGPANAELVLSLPEPHLWSPDDPFLYGLQVTLKAGDKTLDSVTSYFGMRKIALRKDDQGVTRMALNDQFIFQVGTLDQGFWPDGIYTAPSDAALRSDIEFLKQSGFNFTRKHVKVEPDRWYYWCDKLGLMVWQDMPSGNNATVDGRRDFENELCRMVEGLQNHPSIVVWVLFNEGWGQYDTESLTGWLKELDPSRLVDDASGWTDMRVGDLIDMHSYPGPDSPTPESHRAAVLGEFGGLGLTVKNHLWSAHSWGYLMLPDANELADRYTRELKQVWELHRLRGLSAAVYTQTADVETECNGLQTYDRRVAKIAPDVLRAANRGKFTGPPMKIILPDALLGRVNWKYTMVKPGPAWNQPQFDAAGWREGFGGFGASGTPGLFFNTTWDTSDIWLRREFNLGPEDLSGLKLEIFHDEDAEVYLNGVLAAALSHFVTDYQDVDISSEAAATLHPGINTIAVHCHQTTGGQGVDVGILAPLPSKVLEVRKPEK*