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berkeley_reactor_200306_planktonic_scaffold_302219

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_302219_1
unknown

Not on your lists

comp(1..120)
DNA (120bp) protein (40aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_302219_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

777..1334
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI00035EB6B1
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
elongation factor P
berkeley_reactor_200306_planktonic_scaffold_302219_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1656..2600
DNA (945bp) protein (315aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEZ7_9BACT
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EEF61495.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
dTDP-glucose 4,6-dehydratase
berkeley_reactor_200306_planktonic_scaffold_302219_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2884..3759
DNA (876bp) protein (292aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Dihydropteroate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBN3_9BACT
dihydropteroate synthase
berkeley_reactor_200306_planktonic_scaffold_302219_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3749..4657
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBN2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62917.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_302219_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4650..5051
DNA (402bp) protein (134aa)
YbbR family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBN1_9BACT
YbbR family protein {ECO:0000313|EMBL:EEF62916.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_302219_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5070..6452
DNA (1383bp) protein (461aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphoglucosamine mutase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBN0_9BACT
glmM; phosphoglucosamine mutase
berkeley_reactor_200306_planktonic_scaffold_302219_8
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(6475..8487)
DNA (2013bp) protein (671aa)
hypothetical protein n=1 Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI00035EF22B
periplasmic binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ABU59000.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
berkeley_reactor_200306_planktonic_scaffold_302219_9
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8484..8690)
DNA (207bp) protein (69aa)
Putative Fe-S protein n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BJ12_9XANT
DNA mismatch repair protein MutT {ECO:0000313|EMBL:KHM97084.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
ydhL; hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_302219_10
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(8687..9421)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SF49_9FLAO
ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
berkeley_reactor_200306_planktonic_scaffold_302219_11
GWC2_Elusimicrobia_65_9_curated, Elusimicrobia, Bacteria

Not on your lists

comp(9418..10104)
DNA (687bp) protein (229aa)
Uncharacterized protein id=3526064 bin=GWA2_Elusimicrobia_66_18 species=Aeromonas media genus=Aeromonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
PP-loop ATPase
Tax=GWC2_Elusimicrobia_65_9_curated
berkeley_reactor_200306_planktonic_scaffold_302219_12
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10132..10635)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QWT2_ISOPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV62982.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_302219_13
unknown

Not on your lists

comp(10686..11717)
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI00037EF59A
berkeley_reactor_200306_planktonic_scaffold_302219_14
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(12343..13518)
DNA (1176bp) protein (392aa)
Aspartate transaminase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IKJ4_9BACT
aminotransferase A
Aminotransferase A {ECO:0000313|EMBL:AHF93416.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_302219_15
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13536..13931)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036AB102
Tax=GWA2_Burkholderiales_64_37_curated
berkeley_reactor_200306_planktonic_scaffold_302219_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14049..14828)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU54_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90745.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_302219_17
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(14896..15378)
DNA (483bp) protein (161aa)
Transcriptional regulator, AsnC family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZX67_OPITP
AsnC family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_302219_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15487..16752
DNA (1266bp) protein (422aa)
Thiazole biosynthesis protein ThiH n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPP2_9BACT
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:EEF58165.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
thiH; thiamine biosynthesis enzyme ThiH
berkeley_reactor_200306_planktonic_scaffold_302219_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16808..17872
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJW3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59786.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_302219_20
Phycisphaera mikurensis, Phycisphaera, Phycisphaerales, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(17905..19095)
DNA (1191bp) protein (397aa)
galK; galactokinase (EC:2.7.1.6)
Galactokinase n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IF47_PHYMF
Galactokinase {ECO:0000256|SAAS:SAAS00025843}; TaxID=1142394 species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
berkeley_reactor_200306_planktonic_scaffold_302219_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(19364..20347)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000374C6BC
Polyprenyl synthetase {ECO:0000313|EMBL:EDY19542.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
polyprenyl synthetase
berkeley_reactor_200306_planktonic_scaffold_302219_22
unknown

Not on your lists

20375..20629
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00037B32AB
berkeley_reactor_200306_planktonic_scaffold_302219_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20881..21336
DNA (456bp) protein (152aa)
SsrA-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT05_9BACT
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SsrA-binding protein
berkeley_reactor_200306_planktonic_scaffold_302219_24
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21347..21925
DNA (579bp) protein (193aa)
Protein serine/threonine/tyrosine phosphatase, putative n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A0N1_PELCD
protein serine/threonine/tyrosine phosphatase
Tax=RBG_16_Deltaproteobacteria_47_11_curated
berkeley_reactor_200306_planktonic_scaffold_302219_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(21984..22250)
DNA (267bp) protein (89aa)
50S ribosomal protein L28 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT04_9BACT
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
50S ribosomal protein L28
berkeley_reactor_200306_planktonic_scaffold_302219_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

22383..23651
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCG7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62635.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
conserved hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_302219_trna_1
unknown

Not on your lists

23829..23902
DNA (74bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_302219_27
unknown

Not on your lists

comp(24188..24316)
DNA (129bp) protein (43aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_302219_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24756..25547
DNA (792bp) protein (264aa)
Molybdenum ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRL8_9BACT
Molybdenum ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:EEF57537.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
molybdate ABC transporter substrate-binding protein
berkeley_reactor_200306_planktonic_scaffold_302219_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

25544..26209
DNA (666bp) protein (222aa)
molybdate ABC transporter permease n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017452CE
Molybdate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:EEF57536.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
molybdate ABC transporter permease
Displaying items 1-30 of 47 in total

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