ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_4342

Search features with annotation key words

Displaying items 61-90 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_4342_60
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

66653..67636
DNA (984bp) protein (328aa)
Serine/threonine-protein kinase pkn1 {ECO:0000313|EMBL:KJL31368.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KJL31368.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI000370BBC8
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_61
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(67740..69239)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E0V2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC09353.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_62
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(69368..69994)
DNA (627bp) protein (209aa)
Multiple antibiotic resistance (MarC)-related protein n=2 Tax=Microbacterium RepID=H8E6V7_9MICO
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Multiple antibiotic transport protein marC
berkeley_reactor_200306_planktonic_scaffold_4342_63
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(70026..71354)
DNA (1329bp) protein (443aa)
Pyruvate dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A5T3_9MICO
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:KIC58714.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
pdhC; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component
berkeley_reactor_200306_planktonic_scaffold_4342_64
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(71382..72359)
DNA (978bp) protein (326aa)
Transketolase central region n=2 Tax=Microbacterium RepID=H8E6V5_9MICO
Pyruvate dehydrogenase E1 component subunit beta {ECO:0000313|EMBL:EPD84462.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
pdhB; pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
berkeley_reactor_200306_planktonic_scaffold_4342_65
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(72359..73486)
DNA (1128bp) protein (376aa)
Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A793_9MICO
Pyruvate dehydrogenase E1 subunit alpha {ECO:0000313|EMBL:EXJ51756.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
pdhA; pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit
berkeley_reactor_200306_planktonic_scaffold_4342_66
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(73680..74747)
DNA (1068bp) protein (356aa)
Putative phenylalanine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01513}; EC=2.6.1.- {ECO:0000256|HAMAP-Rule:MF_01513};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Putative phenylalanine aminotransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6V3_9MICO
hisC2; histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
berkeley_reactor_200306_planktonic_scaffold_4342_67
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

74832..75230
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B794_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD84459.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_68
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(75240..76574)
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A5T0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC58710.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
berkeley_reactor_200306_planktonic_scaffold_4342_69
unknown

Not on your lists

comp(76571..76822)
DNA (252bp) protein (84aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4342_70
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

76874..77485
DNA (612bp) protein (204aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6U9_9MICO
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:EIC07385.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
ptpA; protein-tyrosine-phosphatase
berkeley_reactor_200306_planktonic_scaffold_4342_71
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

77544..78932
DNA (1389bp) protein (463aa)
Adenylosuccinate lyase domain-containing protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6U8_9MICO
Adenylosuccinate lyase {ECO:0000313|EMBL:KIC58756.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
purB; adenylosuccinate lyase
berkeley_reactor_200306_planktonic_scaffold_4342_72
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(78970..79305)
DNA (336bp) protein (112aa)
Amino acid transporter n=2 Tax=Microbacterium RepID=H8E6U7_9MICO
Amino acid transporter {ECO:0000313|EMBL:KIC58708.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
amino acid transporters
berkeley_reactor_200306_planktonic_scaffold_4342_73
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(79302..79970)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A5S6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD84453.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
berkeley_reactor_200306_planktonic_scaffold_4342_74
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(80070..80507)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AQL6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC58707.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_75
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(80536..80955)
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131) RepID=G0H9R0_CORVD
Glyoxalase {ECO:0000313|EMBL:KIC58706.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_76
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(80961..81398)
DNA (438bp) protein (146aa)
AraC family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W591_9GAMM
AraC family transcriptional regulator {ECO:0000313|EMBL:KIC58705.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_4342_77
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(81395..82372)
DNA (978bp) protein (326aa)
Oxidoreductase domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6U4_9MICO
Oxidoreductase domain protein {ECO:0000313|EMBL:EIC07380.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_4342_78
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

82408..83364
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ACQ5_9MICO
Alcohol dehydrogenase {ECO:0000313|EMBL:EXJ51320.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
NADPH:quinone reductase-related Zn-dependent oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_4342_79
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(83391..83759)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B784_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD84449.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_80
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

83911..85185
DNA (1275bp) protein (425aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A5S1_9MICO
purD; phosphoribosylamine-glycine ligase
berkeley_reactor_200306_planktonic_scaffold_4342_81
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(85223..86707)
DNA (1485bp) protein (495aa)
Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AQL4_9MICO
Multidrug MFS transporter {ECO:0000313|EMBL:KIC58700.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
drug resistance transporter
berkeley_reactor_200306_planktonic_scaffold_4342_82
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(86704..87327)
DNA (624bp) protein (208aa)
Transcriptional regulator PadR family protein n=2 Tax=Microbacterium RepID=H8E6T9_9MICO
Transcriptional regulator {ECO:0000313|EMBL:KIC58699.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
PadR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_4342_83
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

87419..87745
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ACQ1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ51325.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_84
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

87786..88742
DNA (957bp) protein (319aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6T6_9MICO
purC; phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase
berkeley_reactor_200306_planktonic_scaffold_4342_85
Arthrobacter sp. AK-YN10, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(88788..90758)
DNA (1971bp) protein (657aa)
Uncharacterized protein n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1YMV9_9MICC
Uncharacterized protein {ECO:0000313|EMBL:ERI36428.1}; TaxID=1349820 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. AK-YN10.;"
ABC transporter-like protein
berkeley_reactor_200306_planktonic_scaffold_4342_86
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(90755..91981)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Arthrobacter sp. 161MFSha2.1 RepID=UPI00036B436A
Uncharacterized protein {ECO:0000313|EMBL:KHL04256.1}; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_87
unknown

Not on your lists

92360..92674
DNA (315bp) protein (105aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4342_88
unknown

Not on your lists

92717..93616
DNA (900bp) protein (300aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4342_89
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

93745..95100
DNA (1356bp) protein (452aa)
Uracil-xanthine permease n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6T5_9MICO
Uracil-xanthine permease {ECO:0000313|EMBL:EIC07371.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
ycdG; xanthine/uracil permease
Displaying items 61-90 of 178 in total

View Taxonomy