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berkeley_reactor_200306_planktonic_scaffold_4342

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Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_4342_1
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1068)
DNA (1068bp) protein (356aa)
Chaperone protein DnaK n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A7F1_9MICO
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
dnaK; molecular chaperone
berkeley_reactor_200306_planktonic_scaffold_4342_2
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1287..2597
DNA (1311bp) protein (437aa)
Major facilitator superfamily MFS_1 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E700_9MICO
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EIC07436.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
major facilitator transporter
berkeley_reactor_200306_planktonic_scaffold_4342_3
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2672..4486)
DNA (1815bp) protein (605aa)
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ATP-dependent RNA helicase DeaD n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A7D9_9MICO
deaD; superfamily II DNA and RNA helicase
berkeley_reactor_200306_planktonic_scaffold_4342_4
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4513..5010)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ACU9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07434.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_5
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5056..5646
DNA (591bp) protein (197aa)
Peptidase S16 lon domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6Z7_9MICO
Peptidase S16 lon domain protein {ECO:0000313|EMBL:EIC07433.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_6
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5656..6243)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KD32_9MICO
Transcriptional regulator {ECO:0000313|EMBL:CDK00077.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_4342_7
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6358..7002
DNA (645bp) protein (215aa)
Putative polyketide synthase module n=1 Tax=Microbacterium sp. TS-1 RepID=U2XM35_9MICO
Putative polyketide synthase module {ECO:0000313|EMBL:GAD34170.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_8
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7147..8808)
DNA (1662bp) protein (554aa)
Betaine/carnitine/choline transporter (BCCT) family transporter n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AQQ3_9MICO
Choline transporter {ECO:0000313|EMBL:EXJ52163.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
choline-glycine betaine transporter
berkeley_reactor_200306_planktonic_scaffold_4342_9
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8805..9410)
DNA (606bp) protein (202aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Deoxycytidine triphosphate deaminase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6Z4_9MICO
dcd; deoxycytidine deaminase
berkeley_reactor_200306_planktonic_scaffold_4342_10
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9451..10041)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ACU5_9MICO
TetR family transcriptional regulator {ECO:0000313|EMBL:EXJ52165.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
TetR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_4342_11
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10216..10812
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B7C4_9MICO
Cholesterol esterase {ECO:0000313|EMBL:KIC58766.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_12
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10803..11267
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6Z1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07427.1}; Flags: Precursor;; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Otogelin
berkeley_reactor_200306_planktonic_scaffold_4342_13
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11264..12001
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6Z0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ52187.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
filamentous hemagglutinin family outer membrane protein
berkeley_reactor_200306_planktonic_scaffold_4342_trna_1
unknown

Not on your lists

12061..12131
DNA (71bp)
transferRNA Gly
berkeley_reactor_200306_planktonic_scaffold_4342_14
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12350..18859)
DNA (6510bp) protein (2170aa)
RecBCD enzyme subunit RecD {ECO:0000313|EMBL:KJL34598.1}; EC=3.1.11.5 {ECO:0000313|EMBL:KJL34598.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
superfamily I DNA and RNA helicase and helicase subunits n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A438
superfamily I DNA and RNA helicase and helicase subunits
berkeley_reactor_200306_planktonic_scaffold_4342_15
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18870..22046)
DNA (3177bp) protein (1059aa)
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) RepID=B8HE51_ARTCA
DEAD/DEAH box helicase {ECO:0000313|EMBL:KIC58739.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
HsdR family type I site-specific deoxyribonuclease
berkeley_reactor_200306_planktonic_scaffold_4342_16
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22046..23269)
DNA (1224bp) protein (408aa)
DNA polymerase III subunit epsilon n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AIB8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KIC58738.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
DNA polymerase III subunit epsilon
berkeley_reactor_200306_planktonic_scaffold_4342_17
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23266..24585)
DNA (1320bp) protein (440aa)
Putative uncharacterized protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4M7_BEUC1
Uncharacterized protein {ECO:0000313|EMBL:KJL34595.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_18
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24657..25853)
DNA (1197bp) protein (399aa)
Restriction endonuclease S subunit n=1 Tax=Saccharomonospora marina XMU15 RepID=H5X6Z9_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:KJL34594.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
restriction modification system DNA specificity domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_4342_19
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25850..27490)
DNA (1641bp) protein (547aa)
Type I restriction-modification system, DNA-methyltransferase subunit M (EC:2.1.1.72)
Type I restriction-modification system methylase n=1 Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1V3W5_9MICC
Restriction endonuclease subunit M {ECO:0000313|EMBL:KIC58737.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
berkeley_reactor_200306_planktonic_scaffold_4342_20
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27500..29476)
DNA (1977bp) protein (659aa)
Uncharacterized protein n=1 Tax=Leifsonia rubra CMS 76R RepID=S7VZR5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ50397.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_21
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29669..30895
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Candidatus Saccharibacteria bacterium RAAC3_TM7_1 RepID=V5RU93_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIC58736.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_22
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31138..32343
DNA (1206bp) protein (402aa)
Low temperature requirement A n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6Y2_9MICO
Low temperature requirement A {ECO:0000313|EMBL:EIC07418.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
low temperature requirement A
berkeley_reactor_200306_planktonic_scaffold_4342_23
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32316..32957)
DNA (642bp) protein (214aa)
putative secreted M23 family peptidase (EC:3.4.24.-)
Uncharacterized protein n=2 Tax=Microbacterium RepID=S3A5V6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ51785.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
berkeley_reactor_200306_planktonic_scaffold_4342_24
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33028..33915)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6Y0_9MICO
Membrane protein {ECO:0000313|EMBL:EXJ51784.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
permease, DMT superfamily
berkeley_reactor_200306_planktonic_scaffold_4342_25
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33926..35179)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A7C2_9MICO
Beta-lactamase {ECO:0000313|EMBL:EIC07415.1}; Flags: Precursor;; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
beta-lactamase class C and other penicillin binding proteins
berkeley_reactor_200306_planktonic_scaffold_4342_26
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35323..35634
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E6X8_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07414.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4342_27
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35694..36353
DNA (660bp) protein (220aa)
Heme oxygenase-like protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6X7_9MICO
Heme oxygenase {ECO:0000313|EMBL:EXJ51781.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hmuO; heme oxygenase
berkeley_reactor_200306_planktonic_scaffold_4342_28
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36474..37874)
DNA (1401bp) protein (467aa)
AAA ATPase n=2 Tax=Microbacterium RepID=H8E6X6_9MICO
AAA ATPase {ECO:0000313|EMBL:EIC07412.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
berkeley_reactor_200306_planktonic_scaffold_4342_29
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37907..39004
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6X5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07411.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
Displaying items 1-30 of 178 in total

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