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berkeley_reactor_200306_planktonic_scaffold_145241

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Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_145241_1
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(868..2106)
DNA (1239bp) protein (413aa)
DeoR family transcriptional regulator n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B61853
DeoR family transcriptional regulator {ECO:0000313|EMBL:EXJ53072.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Alpha-ketoglutarate permease
berkeley_reactor_200306_planktonic_scaffold_145241_2
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2216..3289)
DNA (1074bp) protein (358aa)
Ribosome-binding ATPase YchF n=2 Tax=Microbacterium RepID=H8E7P2_9MICO
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
GTPase, probable translation factor
berkeley_reactor_200306_planktonic_scaffold_145241_3
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3318..4058)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B9R6_9MICO
SAM-dependent methlyltransferase {ECO:0000313|EMBL:EXJ53068.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
SAM-dependent methyltransferase
berkeley_reactor_200306_planktonic_scaffold_145241_4
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4155..5222
DNA (1068bp) protein (356aa)
adhX; Zn-dependent alcohol dehydrogenase, AdhX (EC:1.1.1.1)
Alcohol dehydrogenase, propanol-preferring n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A864_9MICO
Alcohol dehydrogenase, propanol-preferring {ECO:0000313|EMBL:EPD85358.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
berkeley_reactor_200306_planktonic_scaffold_145241_5
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5361..5966
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ATB4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD85357.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
DNA polymerase III subunit epsilon
berkeley_reactor_200306_planktonic_scaffold_145241_6
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6013..7284
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AA84_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD85356.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_145241_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7295..7441)
DNA (147bp) protein (49aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E7N4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07225.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
berkeley_reactor_200306_planktonic_scaffold_145241_8
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7587..8576)
DNA (990bp) protein (330aa)
Fructose-1,6-bisphosphatase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7N3_9MICO
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
glpX; fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase
berkeley_reactor_200306_planktonic_scaffold_145241_9
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8761..9792
DNA (1032bp) protein (344aa)
Fructose-bisphosphate aldolase, class II n=2 Tax=Microbacterium RepID=H8E7N2_9MICO
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:KIC60272.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
fba; fructose/tagatose bisphosphate aldolase
berkeley_reactor_200306_planktonic_scaffold_145241_10
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9901..10470)
DNA (570bp) protein (190aa)
MOSC domain containing protein n=2 Tax=Microbacterium RepID=H8E7N1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD85352.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_145241_11
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10467..11015)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7N0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07221.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_145241_12
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11012..12001)
DNA (990bp) protein (330aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7M9_9MICO
berkeley_reactor_200306_planktonic_scaffold_145241_13
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12135..13418
DNA (1284bp) protein (428aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B9Q5_9MICO
exonuclease VII, large subunit
berkeley_reactor_200306_planktonic_scaffold_145241_14
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13420..13650
DNA (231bp) protein (77aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Exodeoxyribonuclease 7 small subunit n=2 Tax=Microbacterium RepID=H8E7M7_9MICO
xseB; exonuclease VII small subunit
berkeley_reactor_200306_planktonic_scaffold_145241_15
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13650..14276
DNA (627bp) protein (209aa)
Amino acid transporter n=2 Tax=Microbacterium RepID=H8E7M6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ53058.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
amino acid transporters
berkeley_reactor_200306_planktonic_scaffold_145241_16
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14273..14923
DNA (651bp) protein (217aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Carbonic anhydrase n=2 Tax=Microbacterium RepID=H8E7M5_9MICO
cynT; carbonic anhydrase
berkeley_reactor_200306_planktonic_scaffold_145241_17
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14993..16390
DNA (1398bp) protein (466aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Fumarate hydratase class II n=2 Tax=Microbacterium RepID=H8E7M4_9MICO
fumC; fumarase
berkeley_reactor_200306_planktonic_scaffold_145241_18
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16427..17431
DNA (1005bp) protein (335aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
ATP-binding region ATPase domain protein n=2 Tax=Microbacterium RepID=H8E7M3_9MICO
signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_145241_19
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17428..18084
DNA (657bp) protein (219aa)
Response regulator receiver n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7M2_9MICO
Response regulator receiver {ECO:0000313|EMBL:EIC07213.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
berkeley_reactor_200306_planktonic_scaffold_145241_20
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18106..19461)
DNA (1356bp) protein (452aa)
PhoH family protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7M1_9MICO
ATP-binding protein {ECO:0000313|EMBL:KIC60264.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
phoH; ATPase
berkeley_reactor_200306_planktonic_scaffold_145241_21
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19626..20846)
DNA (1221bp) protein (407aa)
Aminotransferase class V n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7M0_9MICO
Aminotransferase class V {ECO:0000313|EMBL:EIC07211.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_145241_22
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20878..21669)
DNA (792bp) protein (264aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Isoprenyl transferase n=2 Tax=Microbacterium RepID=H8E7L9_9MICO
uppS; undecaprenyl pyrophosphate synthase
berkeley_reactor_200306_planktonic_scaffold_145241_23
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21752..22489
DNA (738bp) protein (246aa)
DNA-binding protein n=1 Tax=Microbacterium paraoxydans RepID=UPI000368C4DF
Hly-III family protein {ECO:0000313|EMBL:EIC07209.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
membrane protein, hemolysin III homolog
berkeley_reactor_200306_planktonic_scaffold_145241_24
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22515..22829)
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E7L7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC60261.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
arabinose efflux permease
berkeley_reactor_200306_planktonic_scaffold_145241_25
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22893..23297
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AT97_9MICO
Transcriptional regulator {ECO:0000313|EMBL:EIC07207.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_145241_26
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23441..23929
DNA (489bp) protein (163aa)
Transcription elongation factor GreA n=2 Tax=Microbacterium RepID=H8E7L5_9MICO
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
transcription elongation factor
berkeley_reactor_200306_planktonic_scaffold_145241_27
Micrococcus luteus, Micrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24020..24934)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000371953A
Uncharacterized protein {ECO:0000313|EMBL:EFD50576.1}; TaxID=596312 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Micrococcus.;" source="Micrococcus luteus SK58.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_145241_28
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25047..26273)
DNA (1227bp) protein (409aa)
Threonine dehydratase n=2 Tax=Microbacterium RepID=H8E7L4_9MICO
Threonine dehydratase {ECO:0000313|EMBL:EIC07205.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
threonine dehydratase
berkeley_reactor_200306_planktonic_scaffold_145241_29
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26270..27469)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7L3_9MICO
AI-E2 family membrane protein {ECO:0000313|EMBL:EXJ53045.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
permease
berkeley_reactor_200306_planktonic_scaffold_145241_30
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27486..28373)
DNA (888bp) protein (296aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Protease HtpX homolog n=2 Tax=Microbacterium RepID=H8E7L2_9MICO
protease
Displaying items 1-30 of 120 in total

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