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berkeley_reactor_200306_planktonic_scaffold_293678

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Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_293678_1
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..915
DNA (915bp) protein (305aa)
Peptide ABC transporter ATP-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YV13_9MICO
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD34468.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_293678_2
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

912..2288
DNA (1377bp) protein (459aa)
Putative acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YMZ1_9MICO
Putative acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:GAD34469.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
berkeley_reactor_200306_planktonic_scaffold_293678_3
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2285..3322
DNA (1038bp) protein (346aa)
Limonene 1,2-monooxygenase {ECO:0000313|EMBL:KJL29831.1}; EC=1.14.13.107 {ECO:0000313|EMBL:KJL29831.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI00036E5E85
luciferase-like monooxygenase protein
berkeley_reactor_200306_planktonic_scaffold_293678_4
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3359..4216
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XN08_9MICO
Uncharacterized protein {ECO:0000313|EMBL:GAD34470.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_293678_5
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4221..5357)
DNA (1137bp) protein (379aa)
Histone acetyltransferase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YMZ6_9MICO
Histone acetyltransferase {ECO:0000313|EMBL:GAD34474.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
histone acetyltransferase
berkeley_reactor_200306_planktonic_scaffold_293678_6
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5426..6427)
DNA (1002bp) protein (334aa)
Amino acid ABC transporter substrate-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XN13_9MICO
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAD34475.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
amino acid ABC transporter periplasmic protein
berkeley_reactor_200306_planktonic_scaffold_293678_7
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6475..7248)
DNA (774bp) protein (258aa)
ABC transporter ATP-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XA99_9MICO
ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD34476.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
polar amino acid ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_293678_8
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7245..8282)
DNA (1038bp) protein (346aa)
Amino acid ABC transporter permease protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XNH8_9MICO
Amino acid ABC transporter permease protein {ECO:0000313|EMBL:GAD34477.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
amino acid ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_293678_9
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8521..8916
DNA (396bp) protein (132aa)
Rhodanese domain protein n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H3J7_CELFA
Rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:AEE46542.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
berkeley_reactor_200306_planktonic_scaffold_293678_10
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8943..9314)
DNA (372bp) protein (124aa)
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N717_MICTS
acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:BAJ74234.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
berkeley_reactor_200306_planktonic_scaffold_293678_trna_1
unknown

Not on your lists

comp(9483..9555)
DNA (73bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_293678_11
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9572..10339)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KLH2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL18028.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
berkeley_reactor_200306_planktonic_scaffold_293678_12
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10454..11299
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDC4_9MICO
Transglutaminase domain-containing protein {ECO:0000313|EMBL:EIC09169.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transglutaminase-like enzyme, cysteine protease
berkeley_reactor_200306_planktonic_scaffold_293678_13
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


11527..13194
DNA (1668bp) protein (556aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Arginine--tRNA ligase n=2 Tax=Microbacterium RepID=H8E200_9MICO
argS; arginyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_293678_14
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13196..14038
DNA (843bp) protein (281aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E201_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86642.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_293678_15
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14173..15609
DNA (1437bp) protein (479aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Diaminopimelate decarboxylase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AEC9_9MICO
lysA; diaminopimelate decarboxylase
berkeley_reactor_200306_planktonic_scaffold_293678_16
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15606..16946
DNA (1341bp) protein (447aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Homoserine dehydrogenase n=2 Tax=Microbacterium RepID=H8E203_9MICO
homoserine dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_293678_17
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16996..18066
DNA (1071bp) protein (357aa)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Threonine synthase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDB8_9MICO
thrC; threonine synthase
berkeley_reactor_200306_planktonic_scaffold_293678_18
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18063..19004
DNA (942bp) protein (314aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Homoserine kinase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ABY2_9MICO
thrB; homoserine kinase
berkeley_reactor_200306_planktonic_scaffold_293678_19
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19170..21248
DNA (2079bp) protein (693aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Transcription termination factor Rho n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E206_9MICO
rho; transcription termination factor
berkeley_reactor_200306_planktonic_scaffold_293678_20
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21257..22333
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E207_9MICO
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
prfA; protein chain release factor A
berkeley_reactor_200306_planktonic_scaffold_293678_21
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22379..22783
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AIM3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86635.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_293678_22
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22791..23396)
DNA (606bp) protein (202aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Serine acetyltransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E209_9MICO
serine acetyltransferase
berkeley_reactor_200306_planktonic_scaffold_293678_23
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23405..24343)
DNA (939bp) protein (313aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Cysteine synthase A n=2 Tax=Microbacterium RepID=H8E210_9MICO
cysteine synthase
berkeley_reactor_200306_planktonic_scaffold_293678_24
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24520..25416
DNA (897bp) protein (299aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Release factor glutamine methyltransferase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AX59_9MICO
hemK; methylase of polypeptide chain release factors
berkeley_reactor_200306_planktonic_scaffold_293678_25
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26422..27609
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AIM0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86630.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
berkeley_reactor_200306_planktonic_scaffold_293678_26
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27606..28142
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E214_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86629.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_293678_27
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28188..29057
DNA (870bp) protein (290aa)
ATP synthase subunit a n=2 Tax=Microbacterium RepID=H8E215_9MICO
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
atpB; F0F1-type ATP synthase, subunit a
berkeley_reactor_200306_planktonic_scaffold_293678_28
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29107..29340
DNA (234bp) protein (78aa)
ATP synthase subunit c n=2 Tax=Microbacterium RepID=H8E216_9MICO
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ATP synthase, C chain
berkeley_reactor_200306_planktonic_scaffold_293678_29
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29367..29903
DNA (537bp) protein (179aa)
ATP synthase subunit b n=2 Tax=Microbacterium RepID=H8E217_9MICO
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
atpF; F0F1-type ATP synthase, subunit b
Displaying items 1-30 of 71 in total

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