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71_012_scaffold_196

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_012_scaffold_196_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1..1071
DNA (1071bp) protein (357aa)
histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Bifidobacterium dentium RepID=B1S6B9_9BIFI
GHKL domain protein {ECO:0000313|EMBL:ETO98059.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_012_scaffold_196_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1109..2311
DNA (1203bp) protein (401aa)
Ribonuclease HI {ECO:0000313|EMBL:ETO98352.1}; EC=3.1.26.4 {ECO:0000313|EMBL:ETO98352.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
rnh; ribonuclease H (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4]
Rnh Ribonuclease H n=2 Tax=Bifidobacterium dentium RepID=D2Q8L6_BIFDB
71_012_scaffold_196_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2452..3150
DNA (699bp) protein (233aa)
rpi; ribose 5-phosphate isomerase (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6]
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Ribose-5-phosphate isomerase A n=4 Tax=Bifidobacterium dentium RepID=D2Q8L5_BIFDB
71_012_scaffold_196_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3231..3320)
DNA (90bp) protein (30aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DQF6_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI95902.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
71_012_scaffold_196_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3433..4047)
DNA (615bp) protein (205aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S6C2_9BIFI
hypothetical protein
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26448.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
71_012_scaffold_196_6
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4111..5520
DNA (1410bp) protein (470aa)
DNA repair protein radA n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q8L3_BIFDB
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
radA; radA DNA repair protein; K04485 DNA repair protein RadA/Sms
71_012_scaffold_196_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5571..7037
DNA (1467bp) protein (489aa)
S-adenosylhomocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
Putative S-adenosylhomocysteine hydrolase {ECO:0000313|EMBL:ADB09148.1}; EC=3.3.1.1 {ECO:0000313|EMBL:ADB09148.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
S-adenosyl-L-homocysteine hydrolase, NAD binding domain protein n=2 Tax=Bifidobacterium dentium RepID=B1S6C4_9BIFI
71_012_scaffold_196_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7042..8442
DNA (1401bp) protein (467aa)
hydrolase (EC:3.5.4.28)
Amidohydrolase family protein n=2 Tax=Bifidobacterium dentium RepID=B1S6C5_9BIFI
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26445.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
71_012_scaffold_196_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8511..8975
DNA (465bp) protein (155aa)
Cupin family protein n=4 Tax=Bifidobacterium dentium RepID=B1S6C6_9BIFI
Cupin domain protein, PF06172 family {ECO:0000313|EMBL:ETO98109.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein; K09705 hypothetical protein
71_012_scaffold_196_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9126..9992
DNA (867bp) protein (289aa)
Solute-binding protein of ABC transporter system n=2 Tax=Bifidobacterium dentium RepID=D2Q8K9_BIFDB
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:ETO98218.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
ABC transporter substrate-binding protein; K02030 polar amino acid transport system substrate-binding protein
71_012_scaffold_196_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10017..10895
DNA (879bp) protein (293aa)
ABC transporter, permease protein n=4 Tax=Bifidobacterium dentium RepID=B1S6C8_9BIFI
ABC transporter, permease protein {ECO:0000313|EMBL:ETO98320.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gluA; Glutamate transport ATP-binding protein gluA; K02029 polar amino acid transport system permease protein
71_012_scaffold_196_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10892..11638
DNA (747bp) protein (249aa)
amino acid transport ATP-binding protein (EC:3.6.3.30)
Amino acid transport ATP-binding protein n=2 Tax=Bifidobacterium dentium RepID=D2Q8K7_BIFDB
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ETO98172.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_012_scaffold_196_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11730..12947)
DNA (1218bp) protein (406aa)
ribF; riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
RibF Riboflavin kinase/FMN adenylyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q8K6_BIFDB
Riboflavin kinase {ECO:0000313|EMBL:ETO98178.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_012_scaffold_196_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12944..14068)
DNA (1125bp) protein (375aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=2 Tax=Bifidobacterium dentium RepID=D2Q8K5_BIFDB
71_012_scaffold_196_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14013..14522)
DNA (510bp) protein (170aa)
Ribosome-binding factor A n=2 Tax=Bifidobacterium dentium RepID=E0Q8L1_9BIFI
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
71_012_scaffold_196_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14627..17446)
DNA (2820bp) protein (940aa)
if2; translation initiation factor IF-2 (EC:2.7.7.4); K02519 translation initiation factor IF-2
Translation initiation factor IF-2 n=3 Tax=Bifidobacterium dentium RepID=E0Q8L2_9BIFI
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_012_scaffold_196_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17657..18697)
DNA (1041bp) protein (347aa)
Transcription termination factor NusA n=2 Tax=Bifidobacterium dentium RepID=E0Q8L3_9BIFI
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
nusA; N utilization substance protein A; K02600 N utilization substance protein A
71_012_scaffold_196_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18968..19636
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S6D6_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO98126.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_012_scaffold_196_trna_1
unknown

Not on your lists

19741..19826
DNA (86bp)
transferRNA Ser
71_012_scaffold_196_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19902..20702)
DNA (801bp) protein (267aa)
Transglutaminase-like protein n=3 Tax=Bifidobacterium dentium RepID=B1S6D7_9BIFI
hypothetical protein
Transglutaminase-like protein {ECO:0000313|EMBL:ETO98264.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_012_scaffold_196_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20803..22983)
DNA (2181bp) protein (727aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S6D9_9BIFI
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26433.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
hypothetical protein
71_012_scaffold_196_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(23182..24015)
DNA (834bp) protein (278aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
rplQ; 50S ribosomal protein L17 (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A n=2 Tax=Bifidobacterium dentium RepID=D2Q8J8_BIFDB
71_012_scaffold_196_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(24173..24670)
DNA (498bp) protein (166aa)
50S ribosomal protein L17 n=2 Tax=Bifidobacterium dentium RepID=E0Q8L8_9BIFI
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
71_012_scaffold_196_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24760..25755)
DNA (996bp) protein (332aa)
polA; polA DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
DNA-directed RNA polymerase subunit alpha n=4 Tax=Bifidobacterium dentium RepID=D2Q8J6_BIFDB
71_012_scaffold_196_24
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(25836..26234)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=5 Tax=Bifidobacterium RepID=D2Q8J5_BIFDB
rpsK; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
71_012_scaffold_196_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26321..26677)
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=16 Tax=Bifidobacterium RepID=RS13_BIFAA
rpsM; 30S ribosomal protein S13P; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Displaying 26 items

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