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AMDSBA4_66

Alias: AMDSBA4_C65

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_66_1
Bacillus hemicellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2..367
DNA (366bp) protein (122aa)
serine/threonine protein phosphatase
no description (db=Gene3D db_id=G3DSA:3.60.21.10 from=1 to=99 evalue=2.9e-09)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=1 to=97 evalue=3.1e-09)
Serine/threonine protein phosphatase {ECO:0000313|EMBL:GAE29568.1}; TaxID=1236971 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus hemicellulosilyticus JCM
AMDSBA4_66_2
unknown

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461..676
DNA (216bp) protein (72aa)
seg (db=Seg db_id=seg from=2 to=20)
AMDSBA4_66_3
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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673..1404
DNA (732bp) protein (244aa)
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase sigma factor, sigma-70 family n=4 Tax=Clostridiales RepID=D4N1B5_9FIRM (db=UNIREF evalue=1.2e-15 bit_score=89.4 identity=30.3 coverage=77.04918032786885)
seg (db=Seg db_id=seg from=84 to=97)
coiled-coil (db=Coil db_id=coil from=97 to=118 evalue=NA)
AMDSBA4_66_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1657..2358
DNA (702bp) protein (234aa)
cwlJ; cell wall hydrolase SleB
Cell wall hydrolase, SleB n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RM02_MOOTA (db=UNIREF evalue=3.2e-18 bit_score=97.8 identity=37.3 coverage=62.39316239316239)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=81 to=110)
AMDSBA4_66_5
unknown

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2417..2632
DNA (216bp) protein (72aa)
2417..2632 + ( gc_cont=0.560)
AMDSBA4_66_6
unknown

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2658..3008
DNA (351bp) protein (117aa)
seg (db=Seg db_id=seg from=82 to=93)
AMDSBA4_66_7
unknown

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3075..3308
DNA (234bp) protein (78aa)
3075..3308 + ( gc_cont=0.479)
AMDSBA4_66_8
unknown

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3356..3958
DNA (603bp) protein (201aa)
seg (db=Seg db_id=seg from=41 to=51)
AMDSBA4_66_9
unknown

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4328..4486
DNA (159bp) protein (53aa)
4328..4486 + ( gc_cont=0.572)
AMDSBA4_66_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4606..5073
DNA (468bp) protein (156aa)
Excisionase domain protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKS2_9BACT (db=UNIREF evalue=1.4e-17 bit_score=95.1 identity=37.9 coverage=78.84615384615384)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=75 to=123 evalue=4.3e-12 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ40121.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA4_66_11
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5076..5657
DNA (582bp) protein (194aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfitobacter RepID=A3SAC5_9RHOB (db=UNIREF evalue=2.4e-11 bit_score=74.7 identity=34.6 coverage=74.74226804123711)
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=132 evalue=5.9e-07)
hypothetical protein Tax=RBG_16_Anaeromyxobacter_69_14_curated
AMDSBA4_66_12
unknown

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5752..5994
DNA (243bp) protein (81aa)
5752..5994 + ( gc_cont=0.547)
AMDSBA4_66_13
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6357..7415
DNA (1059bp) protein (353aa)
transposase IS4 family protein
Transposase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GXW5_SORC5 (db=UNIREF evalue=4.3e-27 bit_score=127.9 identity=34.3 coverage=71.10481586402267)
seg (db=Seg db_id=seg from=164 to=179)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=5 to=308 evalue=5.3e-27 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
AMDSBA4_66_14
unknown

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7709..7822
DNA (114bp) protein (38aa)
7709..7822 + ( gc_cont=0.579)
AMDSBA4_66_15
Brochothrix campestris, Brochothrix, Bacillales, Bacilli, Firmicutes, Bacteria

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7812..8519
DNA (708bp) protein (236aa)
seg (db=Seg db_id=seg from=11 to=20)
seg (db=Seg db_id=seg from=162 to=176)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=42 to=219 evalue=9.2e-17 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=21 to=137 evalue=4.0e-13 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact
AMDSBA4_66_16
unknown

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8679..8942
DNA (264bp) protein (88aa)
seg (db=Seg db_id=seg from=36 to=50)
seg (db=Seg db_id=seg from=54 to=69)
AMDSBA4_66_17
unknown

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9097..9399
DNA (303bp) protein (101aa)
9097..9399 + ( gc_cont=0.614)
AMDSBA4_66_18
unknown

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9509..9736
DNA (228bp) protein (76aa)
9509..9736 + ( gc_cont=0.482)
AMDSBA4_66_19

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9754..10122
DNA (369bp) protein (123aa)
9754..10122 + ( gc_cont=0.602)
Adenine-specific DNA methylase {ECO:0000313|EMBL:EQD53758.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
dau:Daud_0708 DNA methylase N-4/N-6 domain-containing protein alias=ACD63_29716.11970.9G0009,ACD63_29716.11970.9_9,ACD63_C00027G00009 id=96020 tax=ACD63 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1, not OD1-i organism_desc=OD1
AMDSBA4_66_20
unknown

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10302..10607
DNA (306bp) protein (102aa)
seg (db=Seg db_id=seg from=35 to=53)
AMDSBA4_66_21
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10722..11861
DNA (1140bp) protein (380aa)
ATPase associated with various cellular activities AAA_5
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CCZ5_9FIRM (db=UNIREF evalue=7.4e-25 bit_score=120.6 identity=31.9 coverage=67.89473684210526)
seg (db=Seg db_id=seg from=300 to=314)
seg (db=Seg db_id=seg from=205 to=210)
AMDSBA4_66_22

Not on your lists

11967..12359
DNA (393bp) protein (131aa)
11967..12359 + ( gc_cont=0.588)
Uncharacterized protein {ECO:0000313|EMBL:EQD70461.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying 22 items

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