ggKbase home page
Advanced Search
Search Help

CN-SCN_Erythrobacter_14x

CN-SCN_Sphingomonadales_62_14
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 13.72 Longest contig: 128.95 Kbp Bin length: 2.80 Mbp GC content: 61.96 %
Contigs count: 136 Features count: 2751 rRNAs count: 0 tRNAs count: 36

Genome completeness

partial RP 39 / 55 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1

Description

Partial 38

Displaying items 1-50 of 136 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_8793 ERY14_117
Phylum: Proteobacteria (57.14%)
7 7151 bp 59.70 9.91 77.15
cn_combo_scaffold_9047 ERY14_106
Order: Sphingomonadales (100%)
5 6955 bp 61.09 10.40 94.03
cn_combo_scaffold_12836 ERY14_103
Species: BJP_08E140C01_10KDA_Sphingomonadales_62_47 (75%)
4 5003 bp 63.50 11.55 87.49
cn_combo_scaffold_6635 ERY14_81
Species: BJP_08E140C01_10KDA_Sphingomonadales_62_47 (62.5%)
8 9148 bp 61.82 12.00 90.31
cn_combo_scaffold_5791 ERY14_110
Species: uncultured bacterium pAKD4 (72.73%)
11 10329 bp 61.51 12.24 80.80
cn_combo_scaffold_12227 ERY14_100
Order: Sphingomonadales (100%)
5 5223 bp 63.93 12.46 89.37
cn_combo_scaffold_12163 ERY14_133
Order: Sphingomonadales (83.33%)
6 5248 bp 60.99 12.48 86.66
cn_combo_scaffold_3125 ERY14_45
Order: Sphingomonadales (94.12%)
17 18213 bp 63.75 12.50 95.96
cn_combo_scaffold_4450 ERY14_62
Order: Sphingomonadales (83.33%)
12 13194 bp 62.16 12.54 91.68
cn_combo_scaffold_2626 ERY14_36
Order: Sphingomonadales (93.75%)
16 21259 bp 62.53 12.57 95.37
cn_combo_scaffold_4693 ERY14_65
Order: Sphingomonadales (100%)
15 14217 bp 60.55 12.76 92.76
cn_combo_scaffold_4917 ERY14_69
Order: Sphingomonadales (91.67%)
12 11948 bp 61.17 12.76 88.11
cn_combo_scaffold_4820 ERY14_67
Order: Sphingomonadales (63.64%)
11 12218 bp 59.78 12.77 89.57
cn_combo_scaffold_4412 ERY14_61
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
12 13295 bp 61.23 12.85 97.55
cn_combo_scaffold_9409 ERY14_115
Class: Alphaproteobacteria (83.33%)
6 6674 bp 62.35 12.87 97.86
cn_combo_scaffold_10528 ERY14_95
Order: Sphingomonadales (85.71%)
7 6020 bp 63.29 12.87 97.33
cn_combo_scaffold_5459 ERY14_75
Order: Sphingomonadales (100%)
12 14539 bp 62.71 12.88 90.85
cn_combo_scaffold_4133 ERY14_136
Species: Erythrobacter litoralis (70%)
10 14160 bp 60.70 12.90 95.87
cn_combo_scaffold_2639 ERY14_37
Order: Sphingomonadales (88.89%)
18 21176 bp 59.50 12.95 90.87
cn_combo_scaffold_6881 ERY14_114
Species: Erythrobacter litoralis (100%)
15 12866 bp 62.68 12.96 96.72
cn_combo_scaffold_4796 ERY14_137
Genus: Sphingobium (53.85%)
13 13719 bp 62.62 12.98 94.80
cn_combo_scaffold_2023 ERY14_24
Order: Sphingomonadales (100%)
25 27055 bp 62.01 13.06 94.82
cn_combo_scaffold_4105 ERY14_57
Order: Sphingomonadales (90.63%)
32 26559 bp 61.18 13.07 94.33
cn_combo_scaffold_14366 ERY14_134
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
4 5140 bp 62.35 13.09 93.44
cn_combo_scaffold_1870 ERY14_22
Order: Sphingomonadales (82.35%)
34 29077 bp 60.55 13.09 85.74
cn_combo_scaffold_4060 ERY14_56
Order: Sphingomonadales (100%)
16 14407 bp 62.41 13.10 94.54
cn_combo_scaffold_11244 ERY14_98
Order: Sphingomonadales (100%)
6 5653 bp 61.77 13.11 89.53
cn_combo_scaffold_1526 ERY14_14
Order: Sphingomonadales (72.41%)
29 33796 bp 59.08 13.12 91.13
cn_combo_scaffold_7053 ERY14_83
Order: Sphingomonadales (89.47%)
19 16637 bp 62.10 13.12 92.40
cn_combo_scaffold_543 ERY14_2a
Order: Sphingomonadales (78.87%)
71 73757 bp 60.76 13.13 91.40
cn_combo_scaffold_10954 ERY14_96
Species: BJP_IG2102_Porphyrobacter_62_18 (60%)
5 5791 bp 63.17 13.14 95.32
cn_combo_scaffold_2327 ERY14_31
Order: Sphingomonadales (96.15%)
26 23511 bp 60.81 13.16 91.85
cn_combo_scaffold_7646 ERY14_130
Order: Sphingomonadales (90%)
10 8065 bp 64.95 13.19 95.93
cn_combo_scaffold_1748 ERY14_20
Order: Sphingomonadales (89.66%)
29 32733 bp 61.09 13.23 85.77
cn_combo_scaffold_2089 ERY14_28
Order: Sphingomonadales (93.33%)
30 27476 bp 62.58 13.23 93.27
cn_combo_scaffold_11211 ERY14_97
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
8 5669 bp 59.18 13.23 94.36
cn_combo_scaffold_3621 ERY14_126
Order: Sphingomonadales (90%)
10 15883 bp 61.25 13.24 86.38
cn_combo_scaffold_3336 ERY14_50
Order: Sphingomonadales (84.62%)
13 17214 bp 60.25 13.26 92.80
cn_combo_scaffold_835 ERY14_4
Order: Sphingomonadales (97.62%)
42 55450 bp 62.67 13.28 95.72
cn_combo_scaffold_10060 ERY14_116
Species: Erythrobacter litoralis (62.5%)
8 6289 bp 62.47 13.32 93.69
cn_combo_scaffold_5009 ERY14_72
Order: Sphingomonadales (88.89%)
9 11741 bp 60.55 13.34 93.81
cn_combo_scaffold_5934 ERY14_78
Order: Sphingomonadales (80%)
15 17195 bp 60.22 13.37 87.61
cn_combo_scaffold_3483 ERY14_52
Order: Sphingomonadales (93.75%)
16 16497 bp 62.29 13.38 92.08
cn_combo_scaffold_9843 ERY14_94
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
6 6411 bp 61.46 13.38 97.19
cn_combo_scaffold_1566 ERY14_15
Order: Sphingomonadales (85.71%)
35 33089 bp 60.73 13.42 91.40
cn_combo_scaffold_1864 ERY14_118
Order: Sphingomonadales (66.67%)
21 29178 bp 62.63 13.42 93.49
cn_combo_scaffold_3059 ERY14_42
Order: Sphingomonadales (95.24%)
21 18569 bp 61.98 13.43 90.36
cn_combo_scaffold_8258 ERY14_88
Order: Sphingomonadales (81.82%)
11 7552 bp 60.51 13.45 81.16
cn_combo_scaffold_6578 ERY14_80
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
14 9222 bp 62.80 13.47 93.07
cn_combo_scaffold_1598 ERY14_17
Order: Sphingomonadales (96.67%)
30 32612 bp 62.30 13.48 92.91
Displaying items 1-50 of 136 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.