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CN-SCN_Erythrobacter_14x

CN-SCN_Sphingomonadales_62_14
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 13.72 Longest contig: 128.95 Kbp Bin length: 2.80 Mbp GC content: 61.96 %
Contigs count: 136 Features count: 2751 rRNAs count: 0 tRNAs count: 36

Genome completeness

partial RP 39 / 55 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1

Description

Partial 38

Displaying items 1-50 of 136 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_525 ERY14_1
Order: Sphingomonadales (94.07%)
118 128951 bp 61.57 13.77 90.40
cn_combo_scaffold_543 ERY14_2a
Order: Sphingomonadales (78.87%)
71 73757 bp 60.76 13.13 91.40
cn_combo_scaffold_1424 ERY14_13
Order: Sphingomonadales (95.16%)
62 60962 bp 62.61 14.14 89.61
cn_combo_scaffold_858 ERY14_5
Order: Sphingomonadales (96.55%)
58 54444 bp 62.77 14.05 92.07
cn_combo_scaffold_810 ERY14_3
Order: Sphingomonadales (89.09%)
55 56456 bp 63.45 14.53 91.08
cn_combo_scaffold_874 ERY14_6
Order: Sphingomonadales (96.36%)
55 54062 bp 62.07 13.75 93.18
cn_combo_scaffold_723 ERY14_2b
Genus: Erythrobacter (53.85%)
52 66806 bp 61.68 13.62 96.10
cn_combo_scaffold_1211 ERY14_9
Order: Sphingomonadales (100%)
49 41216 bp 62.89 14.26 90.17
cn_combo_scaffold_1071 ERY14_7
Order: Sphingomonadales (97.73%)
44 45691 bp 63.11 13.67 94.00
cn_combo_scaffold_1967 ERY14_119
Species: Erythrobacter sp. JL475 (54.55%)
44 39319 bp 61.42 14.20 94.54
cn_combo_scaffold_835 ERY14_4
Order: Sphingomonadales (97.62%)
42 55450 bp 62.67 13.28 95.72
cn_combo_scaffold_1171 ERY14_8
Order: Sphingomonadales (97.62%)
42 42175 bp 61.79 13.95 91.08
cn_combo_scaffold_1297 ERY14_10
Order: Sphingomonadales (76.19%)
42 39088 bp 62.28 13.77 90.10
cn_combo_scaffold_3067 ERY14_44
Order: Sphingomonadales (97.56%)
41 33311 bp 62.06 14.68 89.85
cn_combo_scaffold_2799 ERY14_40
Order: Sphingomonadales (97.3%)
37 26175 bp 62.36 13.68 93.46
cn_combo_scaffold_1321 ERY14_11
Order: Sphingomonadales (97.22%)
36 38683 bp 63.12 14.14 90.19
cn_combo_scaffold_1566 ERY14_15
Order: Sphingomonadales (85.71%)
35 33089 bp 60.73 13.42 91.40
cn_combo_scaffold_3467 ERY14_51
Order: Sphingomonadales (88.57%)
35 31976 bp 62.73 14.23 90.88
cn_combo_scaffold_1870 ERY14_22
Order: Sphingomonadales (82.35%)
34 29077 bp 60.55 13.09 85.74
cn_combo_scaffold_2665 ERY14_38
Order: Sphingomonadales (97.06%)
34 36743 bp 61.84 14.13 88.87
cn_combo_scaffold_1390 ERY14_12
Order: Sphingomonadales (96.97%)
33 36987 bp 61.35 13.56 94.56
cn_combo_scaffold_1592 ERY14_16
Order: Sphingomonadales (93.94%)
33 32665 bp 62.27 14.27 90.90
cn_combo_scaffold_4105 ERY14_57
Order: Sphingomonadales (90.63%)
32 26559 bp 61.18 13.07 94.33
cn_combo_scaffold_1598 ERY14_17
Order: Sphingomonadales (96.67%)
30 32612 bp 62.30 13.48 92.91
cn_combo_scaffold_2089 ERY14_28
Order: Sphingomonadales (93.33%)
30 27476 bp 62.58 13.23 93.27
cn_combo_scaffold_2822 ERY14_41
Species: BJP_IG2102_Porphyrobacter_62_18 (60%)
30 32697 bp 62.43 14.52 91.20
cn_combo_scaffold_1526 ERY14_14
Order: Sphingomonadales (72.41%)
29 33796 bp 59.08 13.12 91.13
cn_combo_scaffold_1603 ERY14_18
Order: Sphingomonadales (93.1%)
29 32491 bp 61.65 13.96 92.86
cn_combo_scaffold_1748 ERY14_20
Order: Sphingomonadales (89.66%)
29 32733 bp 61.09 13.23 85.77
cn_combo_scaffold_1857 ERY14_21
Order: Sphingomonadales (86.21%)
29 29256 bp 60.12 13.63 90.43
cn_combo_scaffold_2078 ERY14_27
Order: Sphingomonadales (89.29%)
28 26336 bp 62.19 15.06 89.09
cn_combo_scaffold_2062 ERY14_26
Order: Sphingomonadales (85.19%)
27 26555 bp 61.59 13.56 88.25
cn_combo_scaffold_2399 ERY14_33
Order: Sphingomonadales (100%)
27 22903 bp 63.18 14.26 92.08
cn_combo_scaffold_2432 ERY14_34
Order: Sphingomonadales (92.59%)
27 22606 bp 62.02 13.58 92.68
cn_combo_scaffold_1664 ERY14_19
Order: Sphingomonadales (92.31%)
26 31670 bp 63.08 14.24 93.30
cn_combo_scaffold_2059 ERY14_25
Order: Sphingomonadales (96.15%)
26 26610 bp 62.24 13.69 89.71
cn_combo_scaffold_2265 ERY14_30
Order: Sphingomonadales (84.62%)
26 24127 bp 61.85 14.56 87.61
cn_combo_scaffold_2327 ERY14_31
Order: Sphingomonadales (96.15%)
26 23511 bp 60.81 13.16 91.85
cn_combo_scaffold_2046 ERY14_120
Order: Sphingomonadales (69.23%)
26 30416 bp 64.01 13.99 96.92
cn_combo_scaffold_2888 ERY14_125
Order: Sphingomonadales (84.62%)
26 28024 bp 61.81 14.00 88.69
cn_combo_scaffold_2023 ERY14_24
Order: Sphingomonadales (100%)
25 27055 bp 62.01 13.06 94.82
cn_combo_scaffold_2230 ERY14_29
Species: BJP_IG2102_Porphyrobacter_62_18 (56%)
25 24559 bp 61.07 13.53 88.27
cn_combo_scaffold_2581 ERY14_35
Order: Sphingomonadales (96%)
25 21544 bp 65.76 13.55 96.72
cn_combo_scaffold_3112 ERY14_111
Species: Erythrobacter litoralis (75%)
24 18310 bp 62.41 13.50 94.54
cn_combo_scaffold_2637 ERY14_124
Order: Sphingomonadales (86.96%)
23 21193 bp 61.61 14.02 87.45
cn_combo_scaffold_3234 ERY14_48
Order: Sphingomonadales (81.82%)
22 17676 bp 61.76 14.38 87.79
cn_combo_scaffold_3727 ERY14_53
Order: Sphingomonadales (100%)
22 26986 bp 61.61 14.20 89.28
cn_combo_scaffold_1901 ERY14_23
Order: Sphingomonadales (100%)
21 28521 bp 62.09 14.54 93.90
cn_combo_scaffold_3059 ERY14_42
Order: Sphingomonadales (95.24%)
21 18569 bp 61.98 13.43 90.36
cn_combo_scaffold_1864 ERY14_118
Order: Sphingomonadales (66.67%)
21 29178 bp 62.63 13.42 93.49
Displaying items 1-50 of 136 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.