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CN-SCN_Erythrobacter_14x

CN-SCN_Sphingomonadales_62_14
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 13.72 Longest contig: 128.95 Kbp Bin length: 2.80 Mbp GC content: 61.96 %
Contigs count: 136 Features count: 2751 rRNAs count: 0 tRNAs count: 36

Genome completeness

partial RP 39 / 55 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1

Description

Partial 38

Displaying items 1-50 of 136 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_5394 ERY14_129
Order: Sphingomonadales (71.43%)
14 10997 bp 58.29 13.80 82.56
cn_combo_scaffold_1526 ERY14_14
Order: Sphingomonadales (72.41%)
29 33796 bp 59.08 13.12 91.13
cn_combo_scaffold_2551 ERY14_123
Order: Sphingomonadales (80%)
20 21779 bp 59.16 14.08 90.25
cn_combo_scaffold_11211 ERY14_97
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
8 5669 bp 59.18 13.23 94.36
cn_combo_scaffold_11910 ERY14_108
Class: Alphaproteobacteria (50%)
4 5352 bp 59.21 13.73 88.12
cn_combo_scaffold_2639 ERY14_37
Order: Sphingomonadales (88.89%)
18 21176 bp 59.50 12.95 90.87
cn_combo_scaffold_8793 ERY14_117
Phylum: Proteobacteria (57.14%)
7 7151 bp 59.70 9.91 77.15
cn_combo_scaffold_4820 ERY14_67
Order: Sphingomonadales (63.64%)
11 12218 bp 59.78 12.77 89.57
cn_combo_scaffold_3078 ERY14_43
Order: Sphingomonadales (90%)
20 18466 bp 59.93 13.66 88.98
cn_combo_scaffold_1857 ERY14_21
Order: Sphingomonadales (86.21%)
29 29256 bp 60.12 13.63 90.43
cn_combo_scaffold_5934 ERY14_78
Order: Sphingomonadales (80%)
15 17195 bp 60.22 13.37 87.61
cn_combo_scaffold_3336 ERY14_50
Order: Sphingomonadales (84.62%)
13 17214 bp 60.25 13.26 92.80
cn_combo_scaffold_8258 ERY14_88
Order: Sphingomonadales (81.82%)
11 7552 bp 60.51 13.45 81.16
cn_combo_scaffold_1870 ERY14_22
Order: Sphingomonadales (82.35%)
34 29077 bp 60.55 13.09 85.74
cn_combo_scaffold_4693 ERY14_65
Order: Sphingomonadales (100%)
15 14217 bp 60.55 12.76 92.76
cn_combo_scaffold_5009 ERY14_72
Order: Sphingomonadales (88.89%)
9 11741 bp 60.55 13.34 93.81
cn_combo_scaffold_9890 ERY14_132
Order: Sphingomonadales (100%)
5 6385 bp 60.58 13.61 59.34
cn_combo_scaffold_4133 ERY14_136
Species: Erythrobacter litoralis (70%)
10 14160 bp 60.70 12.90 95.87
cn_combo_scaffold_5475 ERY14_76
Order: Sphingomonadales (66.67%)
12 17355 bp 60.71 13.94 84.44
cn_combo_scaffold_1566 ERY14_15
Order: Sphingomonadales (85.71%)
35 33089 bp 60.73 13.42 91.40
cn_combo_scaffold_9827 ERY14_93
Species: BJP_IG2102_Porphyrobacter_62_18 (66.67%)
9 6428 bp 60.73 14.05 97.87
cn_combo_scaffold_543 ERY14_2a
Order: Sphingomonadales (78.87%)
71 73757 bp 60.76 13.13 91.40
cn_combo_scaffold_3253 ERY14_49
Order: Sphingomonadales (92.86%)
14 17583 bp 60.76 14.60 92.70
cn_combo_scaffold_2327 ERY14_31
Order: Sphingomonadales (96.15%)
26 23511 bp 60.81 13.16 91.85
cn_combo_scaffold_8034 ERY14_131
Genus: Novosphingobium (50%)
8 7740 bp 60.87 13.73 90.16
cn_combo_scaffold_4353 ERY14_59
Order: Sphingomonadales (93.33%)
15 13446 bp 60.93 14.50 92.24
cn_combo_scaffold_3751 ERY14_127
Order: Sphingomonadales (76.92%)
13 15402 bp 60.95 13.78 82.59
cn_combo_scaffold_12163 ERY14_133
Order: Sphingomonadales (83.33%)
6 5248 bp 60.99 12.48 86.66
cn_combo_scaffold_2230 ERY14_29
Species: BJP_IG2102_Porphyrobacter_62_18 (56%)
25 24559 bp 61.07 13.53 88.27
cn_combo_scaffold_1748 ERY14_20
Order: Sphingomonadales (89.66%)
29 32733 bp 61.09 13.23 85.77
cn_combo_scaffold_9047 ERY14_106
Order: Sphingomonadales (100%)
5 6955 bp 61.09 10.40 94.03
cn_combo_scaffold_4917 ERY14_69
Order: Sphingomonadales (91.67%)
12 11948 bp 61.17 12.76 88.11
cn_combo_scaffold_4105 ERY14_57
Order: Sphingomonadales (90.63%)
32 26559 bp 61.18 13.07 94.33
cn_combo_scaffold_12273 ERY14_101
Species: BJP_IG2102_Porphyrobacter_62_18 (81.82%)
11 5210 bp 61.21 14.11 89.83
cn_combo_scaffold_4412 ERY14_61
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
12 13295 bp 61.23 12.85 97.55
cn_combo_scaffold_3621 ERY14_126
Order: Sphingomonadales (90%)
10 15883 bp 61.25 13.24 86.38
cn_combo_scaffold_4569 ERY14_109 17 12883 bp 61.30 13.58 83.01
cn_combo_scaffold_1390 ERY14_12
Order: Sphingomonadales (96.97%)
33 36987 bp 61.35 13.56 94.56
cn_combo_scaffold_4454 ERY14_63
Order: Sphingomonadales (92.31%)
13 13183 bp 61.38 14.19 93.12
cn_combo_scaffold_4969 ERY14_71
Order: Sphingomonadales (84.62%)
13 11821 bp 61.38 13.90 87.76
cn_combo_scaffold_2726 ERY14_39
Species: BJP_08E140C01_10KDA_Sphingomonadales_62_47 (77.78%)
18 20535 bp 61.41 14.37 93.65
cn_combo_scaffold_1967 ERY14_119
Species: Erythrobacter sp. JL475 (54.55%)
44 39319 bp 61.42 14.20 94.54
cn_combo_scaffold_9843 ERY14_94
Species: BJP_IG2102_Porphyrobacter_62_18 (50%)
6 6411 bp 61.46 13.38 97.19
cn_combo_scaffold_5791 ERY14_110
Species: uncultured bacterium pAKD4 (72.73%)
11 10329 bp 61.51 12.24 80.80
cn_combo_scaffold_525 ERY14_1
Order: Sphingomonadales (94.07%)
118 128951 bp 61.57 13.77 90.40
cn_combo_scaffold_2062 ERY14_26
Order: Sphingomonadales (85.19%)
27 26555 bp 61.59 13.56 88.25
cn_combo_scaffold_3160 ERY14_46
Order: Sphingomonadales (83.33%)
18 18064 bp 61.60 14.10 94.30
cn_combo_scaffold_3727 ERY14_53
Order: Sphingomonadales (100%)
22 26986 bp 61.61 14.20 89.28
cn_combo_scaffold_2637 ERY14_124
Order: Sphingomonadales (86.96%)
23 21193 bp 61.61 14.02 87.45
cn_combo_scaffold_1603 ERY14_18
Order: Sphingomonadales (93.1%)
29 32491 bp 61.65 13.96 92.86
Displaying items 1-50 of 136 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.