ggKbase home page

gwf2_scaffold_1133

Alias: PER_GWF2_39_17_11

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_1133_1
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(118..585)
DNA (468bp) protein (156aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=42 to=58)
gwf2_scaffold_1133_2
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

1066..2877
DNA (1812bp) protein (604aa)
Tfp pilus assembly protein PilB n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D2C7_HALOH rbh
Tfp pilus assembly protein PilB, type IV pilus assembly protein PilB {ECO:0000313|EMBL:KKR23577.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE
hypothetical protein
T2SP_E (db=PatternScan db_id=PS00662 from=410 to=424 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
gwf2_scaffold_1133_3
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

2914..3501
DNA (588bp) protein (196aa)
PRC-barrel-like Tax=PER_GWF2_39_17
PRC-barrel domain (db=superfamily db_id=SSF50346 from=2 to=83 evalue=0.00082 interpro_id=IPR011033 interpro_description=PRC-barrel-like)
seg (db=Seg db_id=seg from=80 to=92)
gwf2_scaffold_1133_4
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(3652..4068)
DNA (417bp) protein (139aa)
hypothetical protein cdivTM_30108 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00016B2684
hypothetical protein cdivTM_30108 Tax=PER_GWF2_39_17
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=33)
gwf2_scaffold_1133_5
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(4194..5072)
DNA (879bp) protein (293aa)
UDP-N-acetylmuramate dehydrogenase, UDP-N-acetylmuramate dehydrogenase {ECO:0000313|EMBL:KKR23580.1}; EC=1.3.1.98 {ECO:0000313|EMBL:KKR23580.1};; Flags: Fragment;; TaxID=1619064 species="Bacteria; Per
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL) RepID=E3DQM4_HALPG
no description (db=Gene3D db_id=G3DSA:3.30.43.10 from=8 to=80 evalue=1.7e-13 interpro_id=IPR016167 interpro_description=FAD-binding, type 2, subdomain 1 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_1133_6
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(5450..6061)
DNA (612bp) protein (204aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=12 to=27)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=24 evalue=6.0)
gwf2_scaffold_1133_7
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

6163..7452
DNA (1290bp) protein (430aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4K5_GEOUR rbh
hypothetical protein Tax=PER_GWF2_39_17
hypothetical protein
PHP domain-like (db=superfamily db_id=SSF89550 from=1 to=263 evalue=8.9e-14 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
gwf2_scaffold_1133_8
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(7472..9244)
DNA (1773bp) protein (591aa)
NHL repeat containing protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LK88_SYNFM
NHL repeat-containing protein {ECO:0000313|EMBL:KKR26611.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
NHL repeat-containing protein
seg (db=Seg db_id=seg from=51 to=71)
gwf2_scaffold_1133_9
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

9337..11028
DNA (1692bp) protein (564aa)
putative FUMARATE REDUCTASE [FLAVOprotein SUBUNIT] FRDA (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) (EC:1.3.99.1)
Fumarate reductase flavoprotein subunit n=55 Tax=Mycobacterium tuberculosis complex RepID=FRDA_MYCBO rbh
Fumarate reductase flavoprotein subunit, fumarate reductase flavoprotein subunit {ECO:0000313|EMBL:KKR26610.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacteriu
FRD_SDH_FAD_BINDING (db=PatternScan db_id=PS00504 from=44 to=53 evalue=0.0 interpro_id=IPR003952 interpro_description=Fumarate reductase/succinate dehydrogenase, FAD-binding site GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_1133_10
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

11013..12161
DNA (1149bp) protein (383aa)
fumarate reductase iron-sulfur subunit (EC:1.3.99.1)
Fumarate reductase iron-sulfur subunit n=1 Tax=Psychromonas sp. CNPT3 RepID=M4U5F1_9GAMM
Fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC, fumarate reductase iron-sulfur subunit, fumarate reductase subunit C {ECO:0000313|EMBL:KKR07826.1}; TaxID=1619067 species="Bac
2FE2S_FER_1 (db=PatternScan db_id=PS00197 from=62 to=70 evalue=0.0 interpro_id=IPR006058 interpro_description=2Fe-2S ferredoxin, iron-sulphur binding site GO=Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537))
gwf2_scaffold_1133_11
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

12184..12456
DNA (273bp) protein (91aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
gwf2_scaffold_1133_12
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

12572..12757
DNA (186bp) protein (62aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_1133_13
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

12786..12950
DNA (165bp) protein (55aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_1133_14
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

13005..13469
DNA (465bp) protein (155aa)
Nucleoside-diphosphate kinase, nucleoside-diphosphate kinase {ECO:0000313|EMBL:KKR07830.1}; EC=2.7.4.6 {ECO:0000313|EMBL:KKR07830.1};; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Per
nucleoside-diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QJQ5_DESB2
NDP_KINASES (db=PatternScan db_id=PS00469 from=112 to=120 evalue=0.0 interpro_id=IPR023005 interpro_description=Nucleoside diphosphate kinase, active site)
gwf2_scaffold_1133_15
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

13488..14540
DNA (1053bp) protein (351aa)
Phosphate/sulfate permease n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZA0_METHD
phosphate transporter; K03306 inorganic phosphate transporter, PiT family Tax=PER_GWF2_39_17
putative low-affinity inorganic phosphate transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=20)
gwf2_scaffold_1133_16
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

14591..15358
DNA (768bp) protein (256aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=217 to=227)
gwf2_scaffold_1133_17
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

15374..16714
DNA (1341bp) protein (447aa)
Anthranilate synthase {ECO:0000313|EMBL:KKR07833.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KKR07833.1};; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_3
Anthranilate synthase (EC:4.1.3.27)
Anthranilate synthase n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T596_THEA1
seg (db=Seg db_id=seg from=23 to=33)
gwf2_scaffold_1133_18
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(16848..17297)
DNA (450bp) protein (150aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase, 5-(Carboxyamino)imidazole ribonucleotide mutase {ECO:0000313|EMBL:KKR26601.1}; EC=5.4.99.18 {ECO:0000313|EMBL:KKR26601.1};; TaxI
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GHX2_SPICD
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
seg (db=Seg db_id=seg from=100 to=112)
gwf2_scaffold_1133_19
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

17376..18203
DNA (828bp) protein (276aa)
Branched-chain amino acid aminotransferase, branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KKR26600.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KKR26600.1};; TaxID=1619064 species="Bacteria; Pereg
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Putative Aminodeoxychorismate lyase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z0Q2_9BACT
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
gwf2_scaffold_1133_20
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

18200..19051
DNA (852bp) protein (284aa)
folP; dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15] Tax=PER_GWF2_39_17
folP; dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase n=1 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002890477
DHPS_1 (db=PatternScan db_id=PS00792 from=19 to=34 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine-containing compound metabolic process (GO:0042558))
gwf2_scaffold_1133_21
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

19088..19957
DNA (870bp) protein (290aa)
phosphoribulokinase/uridine kinase; K00855 phosphoribulokinase [EC:2.7.1.19] Tax=PER_GWF2_39_17
Phosphoribulokinase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U685_9CLOT
phosphoribulokinase/uridine kinase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=7 to=183 evalue=1.4e-34)
gwf2_scaffold_1133_22
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

19969..20424
DNA (456bp) protein (152aa)
6-pyruvoyl tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=PER_GWF2_39_17
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CGV8_KOSOT
6-pyruvoyl tetrahydropterin synthase
no description (db=Gene3D db_id=G3DSA:3.30.479.10 from=3 to=147 evalue=1.0e-27)
gwf2_scaffold_1133_23
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

20456..21016
DNA (561bp) protein (187aa)
Elongation factor P n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RBB7_DESPD
translation elongation factor P (EF-P); K02356 elongation factor P Tax=PER_GWF2_39_17
translation elongation factor P (EF-P)
(db=HMMPfam db_id=PF09285 from=129 to=185 evalue=1.7e-23 interpro_id=IPR015365 interpro_description=Elongation factor P, C-terminal GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: peptide biosynthetic process (GO:0043043))
gwf2_scaffold_1133_24
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(21013..21624)
DNA (612bp) protein (204aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_1133_25
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(22248..25457)
DNA (3210bp) protein (1070aa)
mfd; transcription-repair coupling factor (EC:3.6.1.-); K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] Tax=PER_GWF2_39_17
mfd; transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair coupling factor n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MXI7_ANATU rbh
seg (db=Seg db_id=seg from=228 to=239)
gwf2_scaffold_1133_26
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(25555..26667)
DNA (1113bp) protein (371aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=PER_GWF2_39_17
DNA polymerase III subunit beta n=7 Tax=Dehalococcoides mccartyi RepID=D3SJH1_DEHSG
DNA polymerase III subunit beta
seg (db=Seg db_id=seg from=10 to=21)
gwf2_scaffold_1133_27
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(27098..29038)
DNA (1941bp) protein (647aa)
RNA-metabolising metallo-beta-lactamase; K12574 ribonuclease J [EC:3.1.-.-] Tax=PER_GWF2_39_17
Ribonuclease J n=1 Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPM1_BACT2 rbh
RNA-metabolising metallo-beta-lactamase
seg (db=Seg db_id=seg from=58 to=72)
gwf2_scaffold_1133_28
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

29122..30483
DNA (1362bp) protein (454aa)
UDP-N-acetylmuramoylalanine-D-glutamate ligase, UDP-N-acetylmuramoylalanine-D-glutamate ligase {ECO:0000313|EMBL:KKR07844.1}; EC=6.3.2.9 {ECO:0000313|EMBL:KKR07844.1};; TaxID=1619067 species="Bacteria
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0E6_9CLOT rbh
UDP-N-acetylmuramoylalanine/D-glutamate ligase
seg (db=Seg db_id=seg from=97 to=107)
gwf2_scaffold_1133_29
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(30480..31967)
DNA (1488bp) protein (496aa)
Polysaccharide biosynthesis protein n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T719_METSL
polysaccharide biosynthesis protein Tax=PER_GWF2_39_17
polysaccharide biosynthesis protein
seg (db=Seg db_id=seg from=163 to=179)
gwf2_scaffold_1133_30
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

32369..33604
DNA (1236bp) protein (412aa)
Cell division protein ftsA n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNI1_9CHLR rbh
Cell division protein FtsA, cell division protein FtsA {ECO:0000313|EMBL:KKR07846.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.;"
cell division protein FtsA
no description (db=HMMSmart db_id=SM00842 from=7 to=195 evalue=1.8e-80 interpro_id=IPR003494 interpro_description=Cell division protein FtsA domain GO=Biological Process: cell cycle (GO:0007049))
Displaying items 1-30 of 37 in total

View Taxonomy