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PLM4_5_b1_sep16_scaffold_4257

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_4257_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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3..755
DNA (753bp) protein (251aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
Isocitrate/isopropylmalate dehydrogenase Tax=uncultured nuHF2 cluster bacterium HF0130_29D04 RepID=E7C3D2_9BACT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_4257_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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784..1800
DNA (1017bp) protein (339aa)
2-hydroxyacid dehydrogenase Tax=Cupriavidus sp. HPC(L) RepID=V2IGW3_9BURK
D-3-phosphoglycerate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_4257_3
unknown

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comp(1856..2200)
DNA (345bp) protein (115aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_4257_4
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2335..3111)
DNA (777bp) protein (259aa)
Putative transmembrane transcriptional regulator (Anti-sigma factor) Tax=Herbaspirillum sp. CF444 RepID=J2M4G9_9BURK
Putative transmembrane transcriptional regulator (Anti-sigma factor) {ECO:0000313|EMBL:EJL92653.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
putative transmembrane protein
PLM4_5_b1_sep16_scaffold_4257_5
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3108..3656)
DNA (549bp) protein (183aa)
RNA polymerase sigma factor Tax=Collimonas fungivorans (strain Ter331) RepID=G0AGR0_COLFT
ECF family RNA polymerase sigma-24 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
PLM4_5_b1_sep16_scaffold_4257_6
unknown

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3831..4073
DNA (243bp) protein (81aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_4257_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4275..5516
DNA (1242bp) protein (414aa)
Porin Tax=Ralstonia sp. AU12-08 RepID=S9RSP8_9RALS
outer membrane porin
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_4257_8
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5731..6087
DNA (357bp) protein (119aa)
Uncharacterized protein {ECO:0000313|EMBL:KIF81798.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
PLM4_5_b1_sep16_scaffold_4257_9
unknown

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6159..6287
DNA (129bp) protein (43aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_4257_10
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6626..7108)
DNA (483bp) protein (161aa)
Cupin 2 conserved barrel domain protein Tax=Methylobacter tundripaludum SV96 RepID=G3J1F4_9GAMM
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EGW21026.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_4257_11
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7154..7507)
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=root RepID=E6QDC1_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK78178.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
PLM4_5_b1_sep16_scaffold_4257_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(7553..8326)
DNA (774bp) protein (258aa)
Putative anti-sigma factor Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHG3_KORVE
anti-sigma factor
Putative anti-sigma factor {ECO:0000313|EMBL:ABF43687.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_5_b1_sep16_scaffold_4257_13
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8328..8987)
DNA (660bp) protein (220aa)
RNA polymerase sigma factor Tax=Collimonas fungivorans (strain Ter331) RepID=G0AGR0_COLFT
ECF family RNA polymerase sigma-24 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
PLM4_5_b1_sep16_scaffold_4257_14
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9135..10019
DNA (885bp) protein (295aa)
Uncharacterized protein Tax=Collimonas fungivorans (strain Ter331) RepID=G0AGQ9_COLFT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK61672.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
PLM4_5_b1_sep16_scaffold_4257_15
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10024..10401
DNA (378bp) protein (126aa)
Heme/copper-type cytochrome/quinol oxidase, subunit 2 Tax=Herbaspirillum sp. CF444 RepID=J3DII3_9BURK
Heme/copper-type cytochrome/quinol oxidase, subunit 2 {ECO:0000313|EMBL:EJL92656.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
cysteine ABC transporter ATP-binding protein
Displaying 15 items

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