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gwf2_scaffold_550

Alias: PER_GWF2_38_29_4

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Displaying items 31-60 of 124 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_550_31
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(37534..38133)
DNA (600bp) protein (200aa)
Elongation factor Ts n=5 Tax=Paenibacillus RepID=E3EHE6_PAEPS
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=PER_GWF2_38_29
elongation factor ts
seg (db=Seg db_id=seg from=120 to=131)
gwf2_scaffold_550_32
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(38163..38657)
DNA (495bp) protein (165aa)
transmembrane_regions Tax=PER_GWF2_38_29
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
seg (db=Seg db_id=seg from=122 to=157)
gwf2_scaffold_550_33
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists


comp(38725..39417)
DNA (693bp) protein (231aa)
30S ribosomal protein S2 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0IA62_CALAS
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=PER_GWF2_38_29
rpsB; 30S ribosomal protein S2
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=158 to=182 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_550_34
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

39669..40184
DNA (516bp) protein (172aa)
ATPase-like, ATP-binding domain Tax=PER_GWF2_38_29
(db=HMMPfam db_id=PF02518 from=46 to=147 evalue=2.9e-09 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=44 to=148 evalue=9.6e-09 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
no description (db=Gene3D db_id=G3DSA:3.30.565.10 from=7 to=157 evalue=9.0e-11 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
gwf2_scaffold_550_35
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

40198..40614
DNA (417bp) protein (139aa)
Anti-sigma F factor antagonist n=3 Tax=Clostridium RepID=B8I4W9_CLOCE
anti-sigma F factor antagonist Tax=PER_GWF2_38_29
anti-sigma-factor antagonist
seg (db=Seg db_id=seg from=125 to=138)
gwf2_scaffold_550_36
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

40624..41919
DNA (1296bp) protein (432aa)
transmembrane_regions Tax=PER_GWF2_38_29
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=3 to=16)
gwf2_scaffold_550_37
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

41998..43107
DNA (1110bp) protein (370aa)
Glycosyl transferase group 1 n=1 Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S805_CALKI rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:KKQ68994.1}; TaxID=1619066 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_38_29.;"
glycosyl transferase group 1
seg (db=Seg db_id=seg from=168 to=179)
gwf2_scaffold_550_38
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(43078..43536)
DNA (459bp) protein (153aa)
transmembrane_regions Tax=PER_GWF2_38_29
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=133 to=143)
gwf2_scaffold_550_39
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

43594..44907
DNA (1314bp) protein (438aa)
GTPase Der n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3A2_SPHTD rbh
small GTP-binding protein; K03977 GTP-binding protein Tax=PER_GWF2_38_29
small GTP-binding protein
GTP-BINDING PROTEIN ENGA (db=HMMPanther db_id=PTHR11649:SF5 from=1 to=437 evalue=1.4e-140 interpro_id=IPR016484 interpro_description=GTP-binding protein EngA GO=Molecular Function: GTP binding (GO:0005525))
gwf2_scaffold_550_40
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(44891..45826)
DNA (936bp) protein (312aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ68997.1}; TaxID=1619066 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_38_29.;"
hypothetical protein
gwf2_scaffold_550_41
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

45863..48169
DNA (2307bp) protein (769aa)
UvrABC system protein C n=2 Tax=Clostridium RepID=UVRC_CLONN rbh
Excinuclease ABC subunit C, excinuclease ABC subunit C {ECO:0000313|EMBL:KKQ68998.1}; TaxID=1619066 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_38_29.;"
uvrC; excinuclease ABC subunit C
seg (db=Seg db_id=seg from=60 to=76)
gwf2_scaffold_550_42
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(48150..49484)
DNA (1335bp) protein (445aa)
Probable tRNA sulfurtransferase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUC9_9BACT
ThiI; thiamine biosynthesis protein ThiI; K03151 thiamine biosynthesis protein ThiI Tax=PER_GWF2_38_29
ThiI; thiamine biosynthesis protein ThiI
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=227 to=444 evalue=1.6e-46)
gwf2_scaffold_550_43
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

49541..50857
DNA (1317bp) protein (439aa)
GTPase obg n=5 Tax=Peptostreptococcus magnus RepID=OBG_FINM2 rbh
putative GTP-binding protein; K03979 GTP-binding protein Tax=PER_GWF2_38_29
putative GTP-binding protein
seg (db=Seg db_id=seg from=31 to=43)
gwf2_scaffold_550_44
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

50865..51461
DNA (597bp) protein (199aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=PER_GWF2_38_29
Peptidyl-tRNA hydrolase n=1 Tax=Dactylococcopsis salina PCC 8305 RepID=K9YYA5_DACSA
peptidyl-tRNA hydrolase
PEPT_TRNA_HYDROL_1 (db=PatternScan db_id=PS01195 from=14 to=27 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045))
gwf2_scaffold_550_45
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists


51537..51944
DNA (408bp) protein (136aa)
LSU ribosomal protein L21p n=1 Tax=Formosa sp. AK20 RepID=M7MHG3_9FLAO
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=PER_GWF2_38_29
50S ribosomal protein L21
seg (db=Seg db_id=seg from=107 to=135)
gwf2_scaffold_550_46
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(51941..52837)
DNA (897bp) protein (299aa)
Pseudouridine synthase n=5 Tax=Dehalococcoides mccartyi RepID=A5FPV8_DEHSB
RNA pseudouridine synthase Tax=PER_GWF2_38_29
ribosomal large subunit pseudouridine synthase D
no description (db=Gene3D db_id=G3DSA:3.10.290.10 from=10 to=83 evalue=0.00079 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723))
gwf2_scaffold_550_47
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(52788..53525)
DNA (738bp) protein (246aa)
Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQI1_NEPCE
Putative uncharacterized protein Tax=PER_GWF2_38_29
Transcriptional regulator, TrmB
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=101 evalue=1.1e-07)
gwf2_scaffold_550_48
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

53670..54857
DNA (1188bp) protein (396aa)
tyrZ; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=PER_GWF2_38_29
tyrZ; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Bacillus clausii (strain KSM-K16) RepID=SYY_BACSK rbh
seg (db=Seg db_id=seg from=268 to=281)
gwf2_scaffold_550_49
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

54854..56590
DNA (1737bp) protein (579aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FHM3_9EURY
rdhC; sensor histidine kinase/response regulator Tax=PER_GWF2_38_29
chemotaxis protein CheY
coiled-coil (db=Coil db_id=coil from=173 to=194 evalue=NA)
gwf2_scaffold_550_50
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

56559..58595
DNA (2037bp) protein (679aa)
RecG; ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=PER_GWF2_38_29
RecG-like helicase n=2 Tax=Caldanaerobacter subterraneus RepID=Q8R9U4_THETN rbh
RecG; ATP-dependent DNA helicase RecG
(db=HMMPfam db_id=PF01336 from=58 to=125 evalue=0.00019 interpro_id=IPR004365 interpro_description=Nucleic acid binding, OB-fold, tRNA/helicase-type GO=Molecular Function: nucleic acid binding (GO:0003676))
gwf2_scaffold_550_51
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(59124..60341)
DNA (1218bp) protein (406aa)
Metallophosphoesterase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PEL8_9BURK
Metallophosphoesterase Tax=PER_GWF2_38_29
coiled-coil (db=Coil db_id=coil from=110 to=131 evalue=NA)
seg (db=Seg db_id=seg from=66 to=85)
gwf2_scaffold_550_52
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(60397..61977)
DNA (1581bp) protein (527aa)
histone acetyltransferase, ELP3 family (EC:2.3.1.48); K07739 elongator complex protein 3 [EC:2.3.1.48] Tax=PER_GWF2_38_29
histone acetyltransferase, ELP3 family (EC:2.3.1.48)
Histone acetyltransferase, ELP3 family n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IGJ9_ACIB4 rbh
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=470 to=525 evalue=0.00012 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
gwf2_scaffold_550_53
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

61994..62650
DNA (657bp) protein (219aa)
hypothetical protein ; K10770 alkylated DNA repair protein alkB homolog 8 [EC:1.14.11.- 2.1.1.229] Tax=PER_GWF2_38_29
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7U988_9EURY
methyltransferase type 11
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=217 evalue=1.6e-37)
gwf2_scaffold_550_54
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

62647..63432
DNA (786bp) protein (262aa)
WecG; teichoic acid biosynthesis proteins; K05946 N-acetylglucosaminyldiphosphoundecaprenol [EC:2.4.1.187] Tax=PER_GWF2_38_29
Teichoic acid biosynthesis proteins n=2 Tax=Caldanaerobacter subterraneus RepID=Q8R864_THETN
WecG; teichoic acid biosynthesis proteins
seg (db=Seg db_id=seg from=82 to=93)
gwf2_scaffold_550_55
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(63433..63684)
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06963.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwf2_scaffold_550_56
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(63745..65157)
DNA (1413bp) protein (471aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=PER_GWF2_38_29
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=GATB_PERMH rbh
GATB (db=PatternScan db_id=PS01234 from=136 to=150 evalue=0.0 interpro_id=IPR017958 interpro_description=Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO=Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884))
gwf2_scaffold_550_57
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(65154..65720)
DNA (567bp) protein (189aa)
coaE; dephosphocoenzyme a kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=PER_GWF2_38_29
coaE; dephosphocoenzyme A kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PRM2_CLOSD
seg (db=Seg db_id=seg from=5 to=16)
gwf2_scaffold_550_58
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(65727..66296)
DNA (570bp) protein (190aa)
transmembrane_regions Tax=PER_GWF2_38_29
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
seg (db=Seg db_id=seg from=38 to=60)
gwf2_scaffold_550_59
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

66376..67020
DNA (645bp) protein (215aa)
sipS; signal peptidase I S (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=PER_GWF2_38_29
Signal peptidase I n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QH90_9BACI
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf2_scaffold_550_60
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(66999..67370)
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ69017.1}; TaxID=1619066 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_38_29.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=94 to=115)
Displaying items 31-60 of 124 in total

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