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gwf2_scaffold_550

Alias: PER_GWF2_38_29_4

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Displaying items 1-30 of 124 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_550_1
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

285..1346
DNA (1062bp) protein (354aa)
RNA polymerase sigma factor n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1E1B6_9GAMM
RpoD subfamily RNA polymerase sigma-70 subunit, RNA polymerase primary sigma factor {ECO:0000313|EMBL:KKQ68958.1}; TaxID=1619066 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacte
hypothetical protein
seg (db=Seg db_id=seg from=149 to=160)
gwf2_scaffold_550_2
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

1366..1707
DNA (342bp) protein (114aa)
Histidine triad (HIT) family protein n=1 Tax=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) RepID=D3DJH0_HYDTT
Histidine triad (HIT) protein {ECO:0000313|EMBL:KKQ68959.1}; TaxID=1619066 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_38_29.;"
histidine triad (HIT) protein
HIT_1 (db=PatternScan db_id=PS00892 from=92 to=110 evalue=0.0 interpro_id=IPR019808 interpro_description=Histidine triad, conserved site)
gwf2_scaffold_550_3
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(1717..2649)
DNA (933bp) protein (311aa)
Tax=PER_GWF2_38_29
gwf2_scaffold_550_4
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(2780..3739)
DNA (960bp) protein (320aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] Tax=PER_GWF2_38_29
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
283aa long hypothetical nicotinate-nucleotide pyrophosphorylase n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O57769_PYRHO
(db=HMMPfam db_id=PF01729 from=143 to=316 evalue=1.0e-38 interpro_id=IPR002638 interpro_description=Quinolinate phosphoribosyl transferase, C-terminal GO=Molecular Function: nicotinate-nucleotide diphosphorylase (carboxylating) activity (GO:0004514), Biological Process: NAD biosynthetic process (GO:0009435))
gwf2_scaffold_550_5
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(3736..4725)
DNA (990bp) protein (330aa)
quinolinate synthetase complex subunit A (EC:2.1.1.63); K03517 quinolinate synthase [EC:2.5.1.72] Tax=PER_GWF2_38_29
Quinolinate synthase A n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=NADA_ALKMQ
quinolinate synthetase complex subunit A
seg (db=Seg db_id=seg from=8 to=27)
gwf2_scaffold_550_6
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(4765..5076)
DNA (312bp) protein (104aa)
Tax=PER_GWF2_38_29
gwf2_scaffold_550_7
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(5147..5392)
DNA (246bp) protein (82aa)
Tax=PER_GWF2_38_29
gwf2_scaffold_550_8
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(5408..5884)
DNA (477bp) protein (159aa)
Tax=PER_GWF2_38_29
gwf2_scaffold_550_9
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists


6009..8630
DNA (2622bp) protein (874aa)
valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=PER_GWF2_38_29
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S228_THEOJ rbh
seg (db=Seg db_id=seg from=23 to=36)
gwf2_scaffold_550_10
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

8617..9537
DNA (921bp) protein (307aa)
coiled-coil Tax=PER_GWF2_38_29
coiled-coil (db=Coil db_id=coil from=103 to=124 evalue=NA)
TPR-like (db=superfamily db_id=SSF48452 from=67 to=167 evalue=0.0024)
seg (db=Seg db_id=seg from=112 to=124)
gwf2_scaffold_550_11
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(9544..10377)
DNA (834bp) protein (278aa)
Tax=PER_GWF2_38_29
gwf2_scaffold_550_12
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(10708..11760)
DNA (1053bp) protein (351aa)
RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7Q1_9BACT
RNA polymerase Tax=PER_GWF2_38_29
hypothetical protein
SIGMA70_2 (db=PatternScan db_id=PS00716 from=44 to=70 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
gwf2_scaffold_550_13
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(11855..12583)
DNA (729bp) protein (243aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EQI3_EMTOG
two component transcriptional regulator Tax=PER_GWF2_38_29
OmpR family, response regulator
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=144 to=242 evalue=1.6e-23 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
gwf2_scaffold_550_14
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists


12705..14084
DNA (1380bp) protein (460aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=PER_GWF2_38_29
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2F8_THEOJ rbh
seg (db=Seg db_id=seg from=118 to=133)
gwf2_scaffold_550_15
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

14214..16805
DNA (2592bp) protein (864aa)
hypothetical protein cdiviTM7_01505 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B22CB rbh
hypothetical protein Tax=PER_GWF2_38_29
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
gwf2_scaffold_550_16
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

17164..18327
DNA (1164bp) protein (388aa)
Tax=PER_GWF2_38_29
gwf2_scaffold_550_17
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(18330..18740)
DNA (411bp) protein (137aa)
coiled-coil Tax=PER_GWF2_38_29
coiled-coil (db=Coil db_id=coil from=44 to=66 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=85 to=101)
gwf2_scaffold_550_18
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

18799..20091
DNA (1293bp) protein (431aa)
murC; UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=PER_GWF2_38_29
UDP-N-acetylmuramate--L-alanine ligase n=2 Tax=Clostridium RepID=MURC_CLONN
UDP-N-acetylmuramate--alanine ligase
(db=HMMPfam db_id=PF01225 from=4 to=101 evalue=1.8e-10 interpro_id=IPR000713 interpro_description=Mur ligase, N-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058))
gwf2_scaffold_550_19
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(20072..21448)
DNA (1377bp) protein (459aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=PER_GWF2_38_29
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=6 Tax=Clostridium thermocellum RepID=SYC_CLOTH rbh
seg (db=Seg db_id=seg from=8 to=18)
gwf2_scaffold_550_20
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(21452..21736)
DNA (285bp) protein (95aa)
Putative integral membrane protein n=1 Tax=Methylomicrobium album BG8 RepID=H8GK36_METAL
hypothetical protein; K02221 YggT family protein Tax=PER_GWF2_38_29
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwf2_scaffold_550_21
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(21747..23903)
DNA (2157bp) protein (719aa)
VCBS repeat-containing protein n=1 Tax=Pantoea sp. YR343 RepID=J2UQX7_9ENTR
hypothetical protein Tax=PER_GWF2_38_29
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
gwf2_scaffold_550_22
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(24031..25053)
DNA (1023bp) protein (341aa)
S-adenosylmethionine-tRNA ribosyltransferase-isomerase, S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000313|EMBL:KKQ68979.1}; EC=5.-.-.- {ECO:0000313|EMBL:KKQ68979.1};; TaxID=1619066 s
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:2.4.99.17)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Helcococcus kunzii ATCC 51366 RepID=H3NN93_9FIRM rbh
seg (db=Seg db_id=seg from=241 to=252)
gwf2_scaffold_550_23
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(25133..27214)
DNA (2082bp) protein (694aa)
transmembrane_regions Tax=PER_GWF2_38_29
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=15 to=29)
gwf2_scaffold_550_24
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(27303..28955)
DNA (1653bp) protein (551aa)
transmembrane_regions Tax=PER_GWF2_38_29
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=366 to=392)
gwf2_scaffold_550_25
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(29081..30226)
DNA (1146bp) protein (382aa)
HAMP domain-containing protein,cache domain-containing protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CAE8_DESTA
protein serine/threonine phosphatase; K07315 sigma-B regulation protein RsbU (phosphoserine phosphatase) Tax=PER_GWF2_38_29
HAMP domain-containing protein,cache domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
gwf2_scaffold_550_26
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(30219..32630)
DNA (2412bp) protein (804aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EB25_METEZ
PBS lyase HEAT domain-containing protein Tax=PER_GWF2_38_29
PBS lyase HEAT domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
gwf2_scaffold_550_27
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

32852..34393
DNA (1542bp) protein (514aa)
Integral membrane protein MviN n=3 Tax=Desulfitobacterium hafniense RepID=B8FUP7_DESHD
integral membrane protein MviN; K03980 virulence factor Tax=PER_GWF2_38_29
integral membrane protein MviN
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
gwf2_scaffold_550_28
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

34573..35337
DNA (765bp) protein (255aa)
coiled-coil Tax=PER_GWF2_38_29
coiled-coil (db=Coil db_id=coil from=101 to=122 evalue=NA)
seg (db=Seg db_id=seg from=16 to=25)
gwf2_scaffold_550_29
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(35309..36346)
DNA (1038bp) protein (346aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K9T8_HALHC
5-amino-6-(5-phosphoribosylamino)uracil reductase {ECO:0000313|EMBL:KKQ68986.1}; TaxID=1619066 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_38_29.;"
2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase
seg (db=Seg db_id=seg from=61 to=73)
gwf2_scaffold_550_30
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

comp(36336..37580)
DNA (1245bp) protein (415aa)
GTP cyclohydrolase-2; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=PER_GWF2_38_29
Riboflavin biosynthesis protein RibBA n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B9M2_9BACI rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase
(db=HMMPfam db_id=PF00925 from=217 to=384 evalue=1.6e-73 interpro_id=IPR000926 interpro_description=GTP cyclohydrolase II, RibA GO=Molecular Function: GTP cyclohydrolase II activity (GO:0003935), Biological Process: riboflavin biosynthetic process (GO:0009231))
Displaying items 1-30 of 124 in total

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