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L1_007_000M1_scaffold_59

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_59_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(71..1117)
DNA (1047bp) protein (349aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.103 1.1.1.14)
Threonine dehydrogenase and related Zn-dependent dehydrogenases n=2 Tax=environmental samples RepID=R5USB8_9FIRM
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:CCZ78629.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_59_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1355..2467)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78630.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative N-acetylglucosamine repressor
L1_007_000M1_scaffold_59_3
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2635..3471)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YEI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25280.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_007_000M1_scaffold_59_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3692..4477)
DNA (786bp) protein (262aa)
Putative amino acid ABC transporter ATP-binding protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5B3_9FIRM
Putative amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCZ78631.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative amino acid ABC transporter, ATP-binding protein
L1_007_000M1_scaffold_59_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4487..5143)
DNA (657bp) protein (219aa)
Predicted ABC-type polar amino acid transport system permease protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCZ9_9FIRM
Predicted ABC-type polar amino acid transport system permease protein {ECO:0000313|EMBL:CCZ78632.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L1_007_000M1_scaffold_59_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5150..5956)
DNA (807bp) protein (269aa)
ABC-type amino acid transport/signal transduction systems periplasmic component/domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UK14_9FIRM
ABC-type amino acid transport/signal transduction systems periplasmic component/domain {ECO:0000313|EMBL:CCZ78633.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
L1_007_000M1_scaffold_59_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6044..8887)
DNA (2844bp) protein (948aa)
Putative calcium-translocating P-type ATPase PMCA-type n=1 Tax=Roseburia sp. CAG:18 RepID=R5USC3_9FIRM
Putative calcium-translocating P-type ATPase PMCA-type {ECO:0000313|EMBL:CCZ78634.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ATPase, P-type (transporting), HAD superfamily, subfamily IC
L1_007_000M1_scaffold_59_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9018..10247
DNA (1230bp) protein (410aa)
Predicted signal transduction protein containing EAL and modified HD-GYP domains n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKU0_9FIRM
Predicted signal transduction protein containing EAL and modified HD-GYP domains {ECO:0000313|EMBL:CCZ78635.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted signal transduction protein containing EAL and modified HD-GYP domains
L1_007_000M1_scaffold_59_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10296..10712)
DNA (417bp) protein (139aa)
ATP synthase F1 subcomplex epsilon subunit (EC:3.6.3.14)
ATP synthase epsilon chain n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5B7_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_59_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10733..11494)
DNA (762bp) protein (254aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ATP synthase subunit beta n=1 Tax=Roseburia sp. CAG:18 RepID=R5VD03_9FIRM
F0F1 ATP synthase subunit beta
L1_007_000M1_scaffold_59_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11445..12047)
DNA (603bp) protein (201aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ATP synthase F1 subcomplex beta subunit (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Roseburia sp. CAG:18 RepID=R5VD03_9FIRM
L1_007_000M1_scaffold_59_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12060..12956)
DNA (897bp) protein (299aa)
ATP synthase gamma chain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UK17_9FIRM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Na+-transporting two-sector ATPase
L1_007_000M1_scaffold_59_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12969..14474)
DNA (1506bp) protein (502aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ATP synthase subunit alpha n=1 Tax=Roseburia sp. CAG:18 RepID=R5USC8_9FIRM
ATP synthase
L1_007_000M1_scaffold_59_14
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14480..14998)
DNA (519bp) protein (173aa)
ATP synthase, F1 delta subunit (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Roseburia sp. CAG:45 RepID=R6NDD9_9FIRM
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
L1_007_000M1_scaffold_59_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14976..15428)
DNA (453bp) protein (151aa)
ATP synthase subunit b 2 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMC4_9FIRM
ATP synthase subunit b 2 {ECO:0000313|EMBL:CCZ79433.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_59_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15473..15703)
DNA (231bp) protein (77aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0 subcomplex C subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFC7_9FIRM
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_59_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15742..16428)
DNA (687bp) protein (229aa)
ATP synthase subunit a n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7J9_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
F0F1 ATP synthase subunit A
L1_007_000M1_scaffold_59_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16655..17611)
DNA (957bp) protein (319aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMV6_9FIRM
L1_007_000M1_scaffold_59_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17608..18381)
DNA (774bp) protein (258aa)
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUN6_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED {ECO:0000313|EMBL:CCZ79429.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L1_007_000M1_scaffold_59_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18453..19106)
DNA (654bp) protein (218aa)
RNA polymerase sigma factor n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMB8_9FIRM
RNA polymerase sigma factor {ECO:0000313|EMBL:CCZ79428.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
FliA/WhiG family RNA polymerase sigma factor
L1_007_000M1_scaffold_59_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19183..19620)
DNA (438bp) protein (146aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFC1_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:CCZ79427.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_59_22
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19622..19939)
DNA (318bp) protein (106aa)
Anti-sigma factor antagonist n=2 Tax=environmental samples RepID=R5V7J5_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
anti-anti-sigma factor
L1_007_000M1_scaffold_59_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20041..21411)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79425.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_59_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21428..21586)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79424.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_59_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21716..23101)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79423.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_59_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23140..26043)
DNA (2904bp) protein (968aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Valine--tRNA ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFB6_9FIRM
valyl-tRNA synthetase
L1_007_000M1_scaffold_59_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26167..29925)
DNA (3759bp) protein (1253aa)
Cation/multidrug efflux pump n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7I8_9FIRM
Cation/multidrug efflux pump {ECO:0000313|EMBL:CCZ79421.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Cation/multidrug efflux pump
L1_007_000M1_scaffold_59_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30143..30286)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79420.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_59_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30416..34156)
DNA (3741bp) protein (1247aa)
Arabinogalactan endo-beta-1,4-galactanase {ECO:0000256|RuleBase:RU361192}; EC=3.2.1.89 {ECO:0000256|RuleBase:RU361192};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
arabinogalactan endo-1,4-beta-galactosidase (EC:3.2.1.89)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUM8_9FIRM
L1_007_000M1_scaffold_59_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34537..35529)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79418.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
Displaying items 1-30 of 150 in total

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