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L1_007_000M1_scaffold_558

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Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_558_1
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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236..913
DNA (678bp) protein (226aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Coprococcus eutactus CAG:665 RepID=R5WMF1_9FIRM
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:CCZ93687.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
nicotinamide mononucleotide transporter PnuC
L1_007_000M1_scaffold_558_2

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comp(1102..1650)
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=human gut metagenome RepID=K1S5Z9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC49160.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_558_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1729..2574)
DNA (846bp) protein (282aa)
Glycerophosphodiester phosphodiesterase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNR2_9FIRM
Glycerophosphodiester phosphodiesterase family protein {ECO:0000313|EMBL:EFB76197.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycerophosphoryl diester phosphodiesterase
L1_007_000M1_scaffold_558_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2832..3518
DNA (687bp) protein (229aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNR3_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB76198.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_558_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3537..5063
DNA (1527bp) protein (509aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNR4_9FIRM
Signal transduction histidine kinase
L1_007_000M1_scaffold_558_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5110..5643
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76200.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_558_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5758..6231)
DNA (474bp) protein (158aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ09_9FIRM
L1_007_000M1_scaffold_558_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6290..7222)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75202.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_558_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7603..8955)
DNA (1353bp) protein (451aa)
Transporter, major facilitator family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ11_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFB75203.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MDR-type permease
L1_007_000M1_scaffold_558_10

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comp(9146..10255)
DNA (1110bp) protein (370aa)
Membrane protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U7T3_9ZZZZ
Membrane protein {ECO:0000313|EMBL:EKC81357.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_558_11

Not on your lists

comp(10407..10958)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1RL39_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC49352.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_558_12

Not on your lists

comp(10965..11552)
DNA (588bp) protein (196aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TDA4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC71167.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_558_13

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comp(11552..12181)
DNA (630bp) protein (210aa)
RNA polymerase sigma factor RpoE (Fragment) n=1 Tax=human gut metagenome RepID=K1TNI1_9ZZZZ
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EKC71168.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
RNA polymerase sigma factor, sigma-70 family
L1_007_000M1_scaffold_558_14
unknown

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12259..12525
DNA (267bp) protein (89aa)

This feature has no annotations

L1_007_000M1_scaffold_558_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12423..13172)
DNA (750bp) protein (250aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EFB77553.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EFB77553.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
exoA; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIG8_9FIRM
L1_007_000M1_scaffold_558_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13188..14534)
DNA (1347bp) protein (449aa)
MATE efflux family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIG9_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EFB77554.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative efflux protein, MATE family
L1_007_000M1_scaffold_558_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14656..15015)
DNA (360bp) protein (120aa)
ABC transporter, ATP-binding protein (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77556.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type antimicrobial peptide transport system, ATPase component
L1_007_000M1_scaffold_558_18
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15092..16081)
DNA (990bp) protein (330aa)
Putative ABC transporter permease protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6BWM6_9CLOT
Putative ABC transporter permease protein {ECO:0000313|EMBL:CDA67630.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
putative ABC transporter permease protein
L1_007_000M1_scaffold_558_19
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16084..17187)
DNA (1104bp) protein (368aa)
Putative ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW87_9FIRM
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCY32414.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
putative ABC transporter permease protein
L1_007_000M1_scaffold_558_20
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17184..18728)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32413.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC transporter ATP-binding protein
L1_007_000M1_scaffold_558_21
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18841..20172)
DNA (1332bp) protein (444aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6CQV4_9CLOT
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDA67627.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
putative ABC transporter substrate-binding protein
L1_007_000M1_scaffold_558_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20461..21054)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77547.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Protein of unknown function (DUF1393).
L1_007_000M1_scaffold_558_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22013..22288)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ2_9FIRM
DNA-binding protein HU {ECO:0000313|EMBL:EFB75927.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial nucleoid DNA-binding protein
L1_007_000M1_scaffold_558_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22605..25844)
DNA (3240bp) protein (1080aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ4_9FIRM
L1_007_000M1_scaffold_558_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25846..26976)
DNA (1131bp) protein (377aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ5_9FIRM
L1_007_000M1_scaffold_558_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27357..27953)
DNA (597bp) protein (199aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
orotate phosphoribosyltransferase, Thermus family (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ6_9FIRM
L1_007_000M1_scaffold_558_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28256..29164)
DNA (909bp) protein (303aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ7_9FIRM
L1_007_000M1_scaffold_558_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29164..29946)
DNA (783bp) protein (261aa)
Dihydroorotate dehydrogenase, electron transfer subunit {ECO:0000313|EMBL:EFB75933.1}; EC=1.3.5.2 {ECO:0000313|EMBL:EFB75933.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Dihydroorotate dehydrogenase, electron transfer subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ8_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L1_007_000M1_scaffold_558_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29927..30793)
DNA (867bp) protein (289aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ9_9FIRM
L1_007_000M1_scaffold_558_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30847..32034)
DNA (1188bp) protein (396aa)
dihydroorotase (EC:3.5.2.3)
Amidohydrolase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN00_9FIRM
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying items 1-30 of 102 in total

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