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L1_008_000G1_scaffold_109

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_109_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

266..676
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S589_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB10331.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L1_008_000G1_scaffold_109_2
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1233..1433)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S9V7_9BIFI
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27175.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
hypothetical protein
L1_008_000G1_scaffold_109_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3406..3738)
DNA (333bp) protein (111aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
CRISPR-associated endoribonuclease Cas2 n=2 Tax=Bifidobacterium RepID=B3DR66_BIFLD
hypothetical protein
L1_008_000G1_scaffold_109_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3725..4642)
DNA (918bp) protein (306aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
CRISPR-associated endonuclease Cas1 n=2 Tax=Bifidobacterium dentium RepID=D2QAN8_BIFDB
cas1; CRISPR-associated protein Cas1
L1_008_000G1_scaffold_109_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4649..8014)
DNA (3366bp) protein (1122aa)
CRISPR-associated endonuclease Csn1 n=2 Tax=Bifidobacterium dentium RepID=D2QAN9_BIFDB
csn1; CRISPR-associated endonuclease Csn1
CRISPR-associated endonuclease Csn1 {ECO:0000313|EMBL:ADB09875.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L1_008_000G1_scaffold_109_6
unknown

Not on your lists

8676..8849
DNA (174bp) protein (58aa)

This feature has no annotations

L1_008_000G1_scaffold_109_7
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9425..10444)
DNA (1020bp) protein (340aa)
prsA; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2QAP3_BIFDB
L1_008_000G1_scaffold_109_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10539..11285)
DNA (747bp) protein (249aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
nadD; nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=4 Tax=Bifidobacterium dentium RepID=D2QAP4_BIFDB
L1_008_000G1_scaffold_109_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11282..11833)
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q649_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO96226.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L1_008_000G1_scaffold_109_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11830..13143)
DNA (1314bp) protein (438aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
Gamma-glutamyl phosphate reductase n=2 Tax=Bifidobacterium dentium RepID=D2QAP6_BIFDB
L1_008_000G1_scaffold_109_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13259..14566)
DNA (1308bp) protein (436aa)
glycine/serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
Serine hydroxymethyltransferase n=4 Tax=Bifidobacterium dentium RepID=D2QAP7_BIFDB
L1_008_000G1_scaffold_109_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14775..16262
DNA (1488bp) protein (496aa)
Threonine synthase {ECO:0000313|EMBL:ETO96210.1}; EC=4.2.3.1 {ECO:0000313|EMBL:ETO96210.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
thrC; thrC Threonine synthase (EC:4.2.3.1)
Threonine synthase n=2 Tax=Bifidobacterium dentium RepID=E0Q646_9BIFI
L1_008_000G1_scaffold_109_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16360..17664
DNA (1305bp) protein (435aa)
Transporter, major facilitator family protein n=2 Tax=Bifidobacterium dentium RepID=E0Q645_9BIFI
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFM42119.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
multidrug resistance protein B
L1_008_000G1_scaffold_109_14
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17754..18314)
DNA (561bp) protein (187aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q639_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42113.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
antibiotic resistance protein
L1_008_000G1_scaffold_109_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18311..18865)
DNA (555bp) protein (185aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S9L3_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETO96138.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_109_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19314..19691
DNA (378bp) protein (126aa)
Transcriptional regulator, GntR family n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S9L1_9BIFI
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ETO96251.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
GntR family transcriptional regulator
L1_008_000G1_scaffold_109_17
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19765..20442)
DNA (678bp) protein (226aa)
haloacid dehalogenase (EC:3.1.3.18)
HAD hydrolase, family IA, variant 3 n=2 Tax=Bifidobacterium dentium RepID=E0Q634_9BIFI
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EFM42108.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L1_008_000G1_scaffold_109_18
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20516..22246)
DNA (1731bp) protein (577aa)
DNA repair protein RecN n=2 Tax=Bifidobacterium dentium RepID=E0Q633_9BIFI
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
recN; DNA repair protein recN
L1_008_000G1_scaffold_109_19
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22256..23230)
DNA (975bp) protein (325aa)
NAD(+) kinase (EC:2.7.1.23)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=4 Tax=Bifidobacterium dentium RepID=D2QAR0_BIFDB
L1_008_000G1_scaffold_109_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23416..24879
DNA (1464bp) protein (488aa)
Cation transport protein n=2 Tax=Bifidobacterium dentium RepID=E0Q631_9BIFI
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27214.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
potassium transporter Trk
L1_008_000G1_scaffold_109_21
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24943..25596
DNA (654bp) protein (218aa)
TrkA N-terminal domain protein n=3 Tax=Bifidobacterium dentium RepID=B1S9K6_9BIFI
TrkA N-terminal domain protein {ECO:0000313|EMBL:EFM42104.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
potassium transporter
L1_008_000G1_scaffold_109_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25609..26415)
DNA (807bp) protein (269aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:EFM42103.1}; EC=2.1.1.- {ECO:0000313|EMBL:EFM42103.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Ribosomal RNA large subunit methyltransferase J n=2 Tax=Bifidobacterium dentium RepID=E0Q629_9BIFI
cell division protein FtsJ
L1_008_000G1_scaffold_109_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26381..27409)
DNA (1029bp) protein (343aa)
haloacid dehalogenase (EC:3.1.3.41)
HAD hydrolase, family IIA n=2 Tax=Bifidobacterium dentium RepID=E0Q628_9BIFI
HAD hydrolase, family IIA {ECO:0000313|EMBL:EFM42102.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L1_008_000G1_scaffold_109_24
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27425..29230)
DNA (1806bp) protein (602aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E1N872_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAR01995.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L1_008_000G1_scaffold_109_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29286..30608)
DNA (1323bp) protein (441aa)
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
Tyrosine--tRNA ligase n=2 Tax=Bifidobacterium dentium RepID=D2QAR7_BIFDB
L1_008_000G1_scaffold_109_26
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30784..32589
DNA (1806bp) protein (602aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q624_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42098.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
transporter
L1_008_000G1_scaffold_109_27
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32612..33394)
DNA (783bp) protein (261aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q623_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42097.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
transporter
L1_008_000G1_scaffold_109_28
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33402..33908)
DNA (507bp) protein (169aa)
HD domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q622_9BIFI
HD domain protein {ECO:0000313|EMBL:EFM42096.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hydrolase
L1_008_000G1_scaffold_109_29
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33908..35470)
DNA (1563bp) protein (521aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Argininosuccinate lyase n=2 Tax=Bifidobacterium dentium RepID=E0Q621_9BIFI
argininosuccinate lyase
L1_008_000G1_scaffold_109_30
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35530..36768)
DNA (1239bp) protein (413aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S9E1_9BIFI
Displaying items 1-30 of 110 in total

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