ggKbase home page

L1_008_000M1_scaffold_1889

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1889_1
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55..831)
DNA (777bp) protein (259aa)
Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NKC0_9FIRM
Competence protein ComEA helix-hairpin-helix repeat region {ECO:0000313|EMBL:CCY97522.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
competence protein ComEA helix-hairpin-helix repeat region
L1_008_000M1_scaffold_1889_2
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(942..1373)
DNA (432bp) protein (144aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N1D2_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCY97523.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1889_3
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1464..2711)
DNA (1248bp) protein (416aa)
Oxidoreductase nitrogenase component 1 n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N6N6_9FIRM
Oxidoreductase nitrogenase component 1 {ECO:0000313|EMBL:CCY97524.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Nitrogenase molybdenum-iron protein, alpha and beta chains
L1_008_000M1_scaffold_1889_4
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2687..4060)
DNA (1374bp) protein (458aa)
Nitrogenase component 1 type Oxidoreductase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N0M4_9FIRM
Nitrogenase component 1 type Oxidoreductase {ECO:0000313|EMBL:CCY97525.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Nitrogenase component 1 type Oxidoreductase.
L1_008_000M1_scaffold_1889_5
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4036..4803)
DNA (768bp) protein (256aa)
Nitrogenase subunit NifH (ATPase) (EC:1.18.6.1)
Putative nitrogenase iron protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJQ7_9FIRM
Putative nitrogenase iron protein {ECO:0000313|EMBL:CCY97526.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1889_6
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4800..5069)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NKC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97527.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1889_7
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5204..6211)
DNA (1008bp) protein (336aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N1D6_9FIRM
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:CCY97528.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hydrogenase expression/formation protein HypE
L1_008_000M1_scaffold_1889_8
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6348..7391)
DNA (1044bp) protein (348aa)
Hydrogenase maturation factor n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N6N8_9FIRM
Hydrogenase maturation factor {ECO:0000313|EMBL:CCY97529.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Hydrogenase maturation factor
L1_008_000M1_scaffold_1889_9
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7391..7639)
DNA (249bp) protein (83aa)
Hydrogenase assembly chaperone HypC/HupF n=3 Tax=Clostridiales RepID=D4LJW2_9FIRM
hydrogenase assembly chaperone HypC/HupF
Hydrogenase assembly chaperone HypC/HupF {ECO:0000313|EMBL:CBL20123.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L1_008_000M1_scaffold_1889_10
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7701..10169)
DNA (2469bp) protein (823aa)
Carbamoyltransferase HypF n=2 Tax=Clostridiales RepID=A5ZMU3_9FIRM
Carbamoyltransferase HypF {ECO:0000313|EMBL:EDM89187.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
[NiFe] hydrogenase maturation protein HypF
L1_008_000M1_scaffold_1889_11
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10246..11283)
DNA (1038bp) protein (346aa)
Nitrogenase molybdenum-iron protein alpha and beta chains n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NKC7_9FIRM
Nitrogenase molybdenum-iron protein alpha and beta chains {ECO:0000313|EMBL:CCY97532.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Nitrogenase molybdenum-iron protein, alpha and beta chains
L1_008_000M1_scaffold_1889_12
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11280..12596)
DNA (1317bp) protein (439aa)
Oxidoreductase nitrogenase component 1 n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N1D7_9FIRM
Oxidoreductase nitrogenase component 1 {ECO:0000313|EMBL:CCY97533.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Nitrogenase molybdenum-iron protein, alpha and beta chains
L1_008_000M1_scaffold_1889_13
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12593..13396)
DNA (804bp) protein (268aa)
Mo-nitrogenase iron protein subunit NifH (EC:1.18.6.1)
Mo-nitrogenase iron protein subunit NifH n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N6P3_9FIRM
Mo-nitrogenase iron protein subunit NifH {ECO:0000313|EMBL:CCY97534.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1889_14
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13787..14143)
DNA (357bp) protein (119aa)
Copper chaperone n=3 Tax=Clostridiales RepID=R5N0N0_9FIRM
Copper chaperone {ECO:0000313|EMBL:CCY97535.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Copper chaperone
L1_008_000M1_scaffold_1889_15
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14162..14359)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97536.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1889_16
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14582..16765)
DNA (2184bp) protein (728aa)
Ferrous iron transport protein B n=1 Tax=Blautia sp. KLE 1732 RepID=U2EEQ0_9FIRM
Ferrous iron transporter FeoB {ECO:0000313|EMBL:CDE32110.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
ferrous iron transporter FeoB
L1_008_000M1_scaffold_1889_17
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16820..17161)
DNA (342bp) protein (114aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N1E1_9FIRM
Fe2+ transport system protein A {ECO:0000313|EMBL:CCY97538.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Fe2+ transport system protein A
L1_008_000M1_scaffold_1889_18
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17277..17489)
DNA (213bp) protein (71aa)
Fe2+ transport system protein A n=3 Tax=Clostridiales RepID=D4LJX2_9FIRM
Fe2+ transport system protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:CBL20133.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L1_008_000M1_scaffold_1889_19
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17727..18731)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GXF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE32104.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
hypothetical protein
L1_008_000M1_scaffold_1889_20
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18747..20165)
DNA (1419bp) protein (473aa)
Citrate transporter n=1 Tax=Blautia sp. KLE 1732 RepID=U2D373_9FIRM
Citrate transporter {ECO:0000313|EMBL:ERI91205.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
transporter, UIT6 family (TC 9.B.53)
L1_008_000M1_scaffold_1889_21
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20571..21755)
DNA (1185bp) protein (395aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
acetylornithine aminotransferase apoenzyme (EC:2.6.1.11)
Acetylornithine aminotransferase n=2 Tax=Clostridiales RepID=R7GYB4_9FIRM
L1_008_000M1_scaffold_1889_22
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21748..22644)
DNA (897bp) protein (299aa)
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=2 Tax=Clostridiales RepID=R7GZA7_9FIRM
Acetylglutamate kinase {ECO:0000313|EMBL:ERI91183.1}; Flags: Fragment;; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L1_008_000M1_scaffold_1889_23
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23098..24231)
DNA (1134bp) protein (378aa)
glutamate N-acetyltransferase/amino-acid acetyltransferase (EC:2.3.1.1 2.3.1.35)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NN87_9FIRM
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1889_24
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24278..25318)
DNA (1041bp) protein (347aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
N-acetyl-gamma-glutamyl-phosphate reductase, common form (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N492_9FIRM
L1_008_000M1_scaffold_1889_25
unknown

Not on your lists

25502..25642
DNA (141bp) protein (47aa)

This feature has no annotations

L1_008_000M1_scaffold_1889_26
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25748..25927
DNA (180bp) protein (60aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Argininosuccinate synthase n=2 Tax=Clostridiales RepID=D4LJY0_9FIRM
L1_008_000M1_scaffold_1889_27
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26055..26852
DNA (798bp) protein (266aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Argininosuccinate synthase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NAB3_9FIRM
L1_008_000M1_scaffold_1889_28
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26972..27901
DNA (930bp) protein (310aa)
Permeases of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4X7_9FIRM
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CCY98828.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Permeases of the drug/metabolite transporter (DMT) superfamily
L1_008_000M1_scaffold_1889_29
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28013..28405)
DNA (393bp) protein (131aa)
Mn-dependent transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:17 PF3_9FIRM">RepID=R5NPF3_9FIRM
Mn-dependent transcriptional regulator {ECO:0000313|EMBL:CCY98827.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Mn-dependent transcriptional regulator
L1_008_000M1_scaffold_1889_30
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28672..30423
DNA (1752bp) protein (584aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NN82_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CCY98826.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
ABC-type multidrug transport system, ATPase and permease components
Displaying items 1-30 of 102 in total

View Taxonomy