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L1_008_000M1_scaffold_53

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_53_1
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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comp(128..631)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FLB0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCY05653.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
hypothetical protein
L1_008_000M1_scaffold_53_2
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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937..2058
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JW91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63084.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Predicted exonuclease
L1_008_000M1_scaffold_53_3
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2158..3225)
DNA (1068bp) protein (356aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Clostridium sp. CAG:411 RepID=R7I769_9CLOT
Ribosomal protein S1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000313|EMBL:CDE47490.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
L1_008_000M1_scaffold_53_4
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3194..4060)
DNA (867bp) protein (289aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Lachnospiraceae RepID=E9RS93_9FIRM
L1_008_000M1_scaffold_53_5
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4060..4725)
DNA (666bp) protein (222aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G699_9FIRM
L1_008_000M1_scaffold_53_6
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4749..5939)
DNA (1191bp) protein (397aa)
NAD(FAD)-utilizing dehydrogenase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T315_ROSHA
NAD(FAD)-utilizing dehydrogenase
NAD(FAD)-utilizing dehydrogenase {ECO:0000313|EMBL:AEN96791.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_53_7
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6226..7653)
DNA (1428bp) protein (476aa)
Oxaloacetate decarboxylase n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NRG4_9FIRM
Oxaloacetate decarboxylase {ECO:0000313|EMBL:CCZ04744.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
oxaloacetate decarboxylase
L1_008_000M1_scaffold_53_8
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7779..8909)
DNA (1131bp) protein (377aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase, beta subunit n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LMI3_9FIRM
Sodium ion-translocating decarboxylase, beta subunit {ECO:0000313|EMBL:EET58156.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
L1_008_000M1_scaffold_53_9
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8973..9338)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6M109_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB89554.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
oxaloacetate decarboxylase
L1_008_000M1_scaffold_53_10
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9371..10129)
DNA (759bp) protein (253aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
Oxaloacetate decarboxylase gamma chain n=2 Tax=Clostridium RepID=D3ALL6_9CLOT
sodium pump decarboxylase subunit gamma
L1_008_000M1_scaffold_53_11
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10208..11647)
DNA (1440bp) protein (480aa)
Carboxyl transferase n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W6L9_9CLOT
Carboxyl transferase {ECO:0000313|EMBL:ENY98544.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
carboxyl transferase
L1_008_000M1_scaffold_53_12
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11851..13245
DNA (1395bp) protein (465aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
apeA; M18 family aminopeptidase 1 (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y587_9CLOT
L1_008_000M1_scaffold_53_13
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13348..14625)
DNA (1278bp) protein (426aa)
Delta-lactam-biosynthetic de-N-acetylase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IKE0_9FIRM
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:EOS22414.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
polysaccharide deacetylase
L1_008_000M1_scaffold_53_14
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14637..14879)
DNA (243bp) protein (81aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KNY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88032.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L1_008_000M1_scaffold_53_15
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14906..16162)
DNA (1257bp) protein (419aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G576_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDR46926.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L1_008_000M1_scaffold_53_16
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16202..16972)
DNA (771bp) protein (257aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=C9LA81_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EEX20879.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
nitroreductase
L1_008_000M1_scaffold_53_17
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16987..18777)
DNA (1791bp) protein (597aa)
Oligoendopeptidase F n=1 Tax=Roseburia sp. CAG:303 RepID=R7IR74_9FIRM
Oligoendopeptidase F {ECO:0000313|EMBL:CDE53778.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
peptidase
L1_008_000M1_scaffold_53_18
Treponema sp. JC4, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(18858..19508)
DNA (651bp) protein (217aa)
HAD-superfamily hydrolase subfamily IA variant 3 n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8F3_9CLOT
Haloacid dehalogenase superfamily, subfamily IA, variant 3 {ECO:0000313|EMBL:EID85966.1}; TaxID=1124982 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema sp. JC4.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L1_008_000M1_scaffold_53_19
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19908..20684
DNA (777bp) protein (259aa)
RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETK7_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L1_008_000M1_scaffold_53_20
Coprobacillus sp. CAG:605, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20714..21190)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:605 RepID=R5VEK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ88835.1}; TaxID=1262855 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:605.;"
Predicted membrane protein
L1_008_000M1_scaffold_53_21
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21243..22697)
DNA (1455bp) protein (485aa)
Putative uncharacterized protein n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HFA5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK83588.1}; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
L1_008_000M1_scaffold_53_22
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(22723..24141)
DNA (1419bp) protein (473aa)
MBOAT family protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6REW0_9FIRM
MBOAT family protein {ECO:0000313|EMBL:CDC46360.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Predicted membrane protein involved in D-alanine export
L1_008_000M1_scaffold_53_23
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24318..25076)
DNA (759bp) protein (253aa)
Chaperone protein DnaJ n=1 Tax=Eubacterium sp. CAG:156 RepID=R5Z676_9FIRM
Chaperone protein DnaJ {ECO:0000313|EMBL:CDA29616.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L1_008_000M1_scaffold_53_24
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25073..25981)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JUM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE67331.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
hypothetical protein
L1_008_000M1_scaffold_53_25
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26013..26420)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N6E4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97469.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_53_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26787..27527)
DNA (741bp) protein (247aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CPC6_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
RNA polymerase, sigma 29 subunit, SigE
L1_008_000M1_scaffold_53_27
unknown

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comp(27696..28565)
DNA (870bp) protein (290aa)

This feature has no annotations

L1_008_000M1_scaffold_53_28
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28634..29779)
DNA (1146bp) protein (382aa)
Cell division protein FtsZ n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N7W0_9FIRM
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
cell division protein FtsZ
L1_008_000M1_scaffold_53_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29925..30671)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZLZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44429.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L1_008_000M1_scaffold_53_30
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30741..31994)
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AP93_9CLOT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Displaying items 1-30 of 140 in total

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