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L1_008_000M1_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_85_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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188..1021
DNA (834bp) protein (278aa)
Sir2 (Silent information regulator)-like protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ERE9_BIFBS
Sir2 (silent information regulator)-like protein
Sir2 (Silent information regulator)-like protein {ECO:0000313|EMBL:ADO53953.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_85_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1184..2692)
DNA (1509bp) protein (503aa)
Threonine dehydratase {ECO:0000313|EMBL:KFI42093.1}; EC=4.3.1.17 {ECO:0000313|EMBL:KFI42093.1};; EC=4.3.1.19 {ECO:0000313|EMBL:KFI42093.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Threonine ammonia-lyase n=2 Tax=Bifidobacterium bifidum RepID=U2DRU8_BIFBI
tdcB; threonine dehydratase
L1_008_000M1_scaffold_85_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2706..3158)
DNA (453bp) protein (151aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Cytidine and deoxycytidylate deaminase zinc-binding region n=6 Tax=Bifidobacterium RepID=E4VC80_BIFBI
cumB; putative cytidine and deoxycytidylate deaminase
L1_008_000M1_scaffold_85_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3316..4062
DNA (747bp) protein (249aa)
Phospholipase/carboxylesterase n=5 Tax=Bifidobacterium bifidum RepID=E4VC81_BIFBI
Phospholipase/carboxylesterase {ECO:0000313|EMBL:KFI42095.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
putative phospholipase/carboxylesterase
L1_008_000M1_scaffold_85_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4096..6165)
DNA (2070bp) protein (690aa)
Na+/H+ antiporter n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ERF3_BIFBS
nhaP; Na+/H+ antiporter
Na+/H+ antiporter {ECO:0000313|EMBL:ADO53957.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_85_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6542..7123
DNA (582bp) protein (194aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Deoxycytidine triphosphate deaminase n=6 Tax=Bifidobacterium bifidum RepID=E3ERF4_BIFBS
dcd Deoxycytidine triphosphate deaminase
L1_008_000M1_scaffold_85_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7215..9494)
DNA (2280bp) protein (760aa)
Alpha-galactosidase {ECO:0000313|EMBL:ABD96085.1}; EC=3.2.1.22 {ECO:0000313|EMBL:ABD96085.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
rafA; alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=Q1KTD9_BIFBI
L1_008_000M1_scaffold_85_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9660..12611)
DNA (2952bp) protein (984aa)
ATPase P (EC:3.6.3.8)
ATPase, P-type (Transporting) n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0H9_BIFBP
ATPase P-type (Transporting) {ECO:0000313|EMBL:CDB22371.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_85_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12822..12938)
DNA (117bp) protein (39aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKJ1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL05404.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_85_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13232..14239
DNA (1008bp) protein (336aa)
RNA/rRNA methyltransferase protein {ECO:0000313|EMBL:KFI42101.1}; EC=2.1.1.185 {ECO:0000313|EMBL:KFI42101.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
RNA/rRNA methyltransferase protein (EC:2.1.1.66)
SpoU rRNA methylase family protein n=7 Tax=Bifidobacterium RepID=E3ERF8_BIFBS
L1_008_000M1_scaffold_85_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14350..15765)
DNA (1416bp) protein (472aa)
Lipopolysaccharide kinase n=2 Tax=Bifidobacterium bifidum RepID=I3WKJ3_BIFBI
lipopolysaccharide kinase
Lipopolysaccharide kinase {ECO:0000313|EMBL:AFL05406.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_85_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15756..16616)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRU2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42103.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
putative secreted protein
L1_008_000M1_scaffold_85_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16600..17583)
DNA (984bp) protein (328aa)
Sortase n=2 Tax=Bifidobacterium bifidum RepID=K2LG13_BIFBI
Putative sortase {ECO:0000313|EMBL:BAQ99013.1}; Sortase family protein {ECO:0000313|EMBL:ERI84301.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
sortase
L1_008_000M1_scaffold_85_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17664..19262)
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GA34_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22298.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
trypsin-resistant surface T6 protein
L1_008_000M1_scaffold_85_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19327..27036)
DNA (7710bp) protein (2570aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VC93_BIFBI
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EFR51208.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
cell surface protein with LPXTG anchor
L1_008_000M1_scaffold_85_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27653..28204
DNA (552bp) protein (184aa)
Integrase, catalytic region n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0I6_BIFBP
integrase, catalytic region
Integrase, catalytic region {ECO:0000313|EMBL:KFI42108.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_85_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28390..29517)
DNA (1128bp) protein (376aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium bifidum RepID=E4VC95_BIFBI
msmX; putative multiple sugar-binding transportATP-binding protein
Putative multiple sugar-binding transportATP-binding protein {ECO:0000313|EMBL:AFL05412.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_85_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29969..30880)
DNA (912bp) protein (304aa)
CTP synthase (UTP-ammonia lyase) n=2 Tax=Bifidobacterium bifidum RepID=I3WKK0_BIFBI
CTP synthase
CTP synthase (UTP-ammonia lyase) {ECO:0000313|EMBL:AFL05413.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_85_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31429..33900
DNA (2472bp) protein (824aa)
pkwA; putative serine/threonine-protein kinase (EC:2.7.11.1)
Putative serine/threonine-protein kinase {ECO:0000313|EMBL:AFL05414.1}; EC=2.7.11.1 {ECO:0000313|EMBL:AFL05414.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative serine/threonine-protein kinase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKK1_BIFBI
L1_008_000M1_scaffold_85_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33919..35025
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DWU6_BIFBI
Protein-disulfide isomerase {ECO:0000313|EMBL:KFI42112.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L1_008_000M1_scaffold_85_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35643..37142
DNA (1500bp) protein (500aa)
lytic transglycosylase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036141EC
collagen-binding domain
Uncharacterized protein {ECO:0000313|EMBL:KFI42113.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_85_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


37154..38104
DNA (951bp) protein (317aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribosomal RNA small subunit methyltransferase A n=5 Tax=Bifidobacterium RepID=E3ERH1_BIFBS
ksgA; Dimethyladenosine transferase
L1_008_000M1_scaffold_85_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38101..39141
DNA (1041bp) protein (347aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036CFC68
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L1_008_000M1_scaffold_85_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39183..39809
DNA (627bp) protein (209aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WKK6_BIFBI
hypothetical protein
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:ERI84286.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99025.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_85_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39901..41328)
DNA (1428bp) protein (476aa)
RNA nucleotidyltransferase {ECO:0000313|EMBL:KFI42117.1}; EC=2.7.7.72 {ECO:0000313|EMBL:KFI42117.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
RNA nucleotidyltransferase (EC:2.7.7.72)
tRNA adenylyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIC8_BIFBI
L1_008_000M1_scaffold_85_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41405..42058
DNA (654bp) protein (218aa)
Phosphohydrolase (Nudix family protein) n=8 Tax=Bifidobacterium RepID=E3ERH5_BIFBS
NTP pyrophosphohydrolase
NTP pyrophosphohydrolase {ECO:0000313|EMBL:AFL05421.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_85_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42157..44331
DNA (2175bp) protein (725aa)
hypothetical protein n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976D14
Uncharacterized protein {ECO:0000313|EMBL:EKE51220.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L1_008_000M1_scaffold_85_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

44328..48689
DNA (4362bp) protein (1454aa)
Putative virulence factor protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HB21_BIFBI
Putative virulence factor protein {ECO:0000313|EMBL:EKE51221.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
mviN; putative virulence factor protein
L1_008_000M1_scaffold_85_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

48883..50049
DNA (1167bp) protein (389aa)
Thioredoxin reductase {ECO:0000313|EMBL:KFI42121.1}; EC=1.8.1.9 {ECO:0000313|EMBL:KFI42121.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DWT8_BIFBI
L1_008_000M1_scaffold_85_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(50506..51870)
DNA (1365bp) protein (455aa)
Chromosome partitioning protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMH3_9BIFI
Chromosome partitioning protein {ECO:0000313|EMBL:CDB22869.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
chromosome partitioning protein
Displaying items 1-30 of 95 in total

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