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L1_008_000M1_scaffold_1809

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1809_1
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..258)
DNA (258bp) protein (86aa)
PF09924 family protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BA73_9CLOT
PF09924 family protein {ECO:0000313|EMBL:CCX51164.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_1809_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(341..1495)
DNA (1155bp) protein (385aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60 4.6.1.12)
2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B606_9CLOT
Bifunctional enzyme IspD/IspF {ECO:0000256|SAAS:SAAS00096235}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_1809_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1497..1745)
DNA (249bp) protein (83aa)
S4 domain protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B237_9CLOT
S4 domain protein {ECO:0000313|EMBL:CCX49620.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
S4 domain-containing protein
L1_008_000M1_scaffold_1809_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1831..3273)
DNA (1443bp) protein (481aa)
PPIC-type PPIASE domain n=1 Tax=Clostridium sp. CAG:226 RepID=R5BGY5_9CLOT
PPIC-type PPIASE domain {ECO:0000313|EMBL:CCX50726.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_1809_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3351..6797)
DNA (3447bp) protein (1149aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Transcription-repair-coupling factor n=1 Tax=Clostridium sp. CAG:226 RepID=R5BCZ6_9CLOT
transcription-repair coupling factor
L1_008_000M1_scaffold_1809_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6790..7443)
DNA (654bp) protein (218aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B614_9CLOT
L1_008_000M1_scaffold_1809_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7729..9474
DNA (1746bp) protein (582aa)
Na/Pi-cotransporter n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MIE1_9FIRM
Na/Pi-cotransporter
Na/Pi-cotransporter {ECO:0000313|EMBL:CBL33524.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_1809_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9764..10606)
DNA (843bp) protein (281aa)
Epimerase PhzC/PhzF-like protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3U6_9CLOT
Epimerase PhzC/PhzF-like protein {ECO:0000313|EMBL:CCX50250.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
phenazine biosynthesis protein phzF
L1_008_000M1_scaffold_1809_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10776..13316
DNA (2541bp) protein (847aa)
Ferrous iron transport protein B n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7L6_9CLOT
Ferrous iron transport protein B {ECO:0000313|EMBL:CCX50249.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ferrous iron transporter FeoB
L1_008_000M1_scaffold_1809_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13545..14105
DNA (561bp) protein (187aa)
Ribosomal subunit interface protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4M5_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:CCX50248.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
sigma 54 modulation protein / 30S ribosomal protein S30P
L1_008_000M1_scaffold_1809_11
Bacillus amyloliquefaciens, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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14271..14507
DNA (237bp) protein (79aa)
AbrB-like protein n=11 Tax=Bacillus RepID=A7Z3H7_BACA2
AbrB-like protein
AbrB family transcriptional regulator {ECO:0000313|EMBL:KJD56662.1}; TaxID=1390 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus amyloliquefaciens (Bacillus velezensis).;"
L1_008_000M1_scaffold_1809_12
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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14504..15247
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI0002DBA162
Uncharacterized protein {ECO:0000313|EMBL:EEL50426.1}; TaxID=526986 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus Rock3-44.;"
ABC transporter family protein
L1_008_000M1_scaffold_1809_13
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15244..15975
DNA (732bp) protein (244aa)
ABC-2 type transporter n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QEB1_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
ABC transporter
L1_008_000M1_scaffold_1809_14
unknown

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comp(16068..16601)
DNA (534bp) protein (178aa)

This feature has no annotations

L1_008_000M1_scaffold_1809_15
Pseudoramibacter alactolyticus, Pseudoramibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17055..17294)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MH62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV01952.1}; TaxID=887929 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Pseudoramibacter.;" source="Pseudoramibacter alactolyticus ATCC 23263.;"
L1_008_000M1_scaffold_1809_16
Pseudoramibacter alactolyticus, Pseudoramibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17291..18133)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MH62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV01952.1}; TaxID=887929 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Pseudoramibacter.;" source="Pseudoramibacter alactolyticus ATCC 23263.;"
hypothetical protein
L1_008_000M1_scaffold_1809_17
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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18296..19042
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Treponema denticola OTK RepID=M2B8B6_TREDN
Uncharacterized protein {ECO:0000313|EMBL:KGJ52735.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
ABC transporter ATP-binding protein/peptidase
L1_008_000M1_scaffold_1809_18
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19365..34802)
DNA (15438bp) protein (5146aa)
Filamentous hemagglutinin family outer membrane protein n=1 Tax=Thauera sp. 27 RepID=N6Y1C7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KEO60051.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
filamentous hemagglutinin family outer membrane protein
Displaying 18 items

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