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L1_008_000M1_scaffold_163

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_163_1
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..159)
DNA (159bp) protein (53aa)
Uncharacterized protein n=9 Tax=Firmicutes RepID=A5ZT96_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDM87320.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L1_008_000M1_scaffold_163_2
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(225..650)
DNA (426bp) protein (142aa)
Acetyltransferases (EC:2.3.1.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B306_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45841.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L1_008_000M1_scaffold_163_3
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(694..1386)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DAN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72906.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L1_008_000M1_scaffold_163_4
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(1383..2159)
DNA (777bp) protein (259aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
tRNA pseudouridine synthase A n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AR22_9FIRM
tRNA pseudouridine synthase A
L1_008_000M1_scaffold_163_5
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(2240..2983)
DNA (744bp) protein (248aa)
Uncharacterized protein n=2 Tax=root RepID=R5AV35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45839.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L1_008_000M1_scaffold_163_6
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(2996..3769)
DNA (774bp) protein (258aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=3 Tax=root RepID=R5AS88_9FIRM
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:CCX45838.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
CO dehydrogenase maturation factor
L1_008_000M1_scaffold_163_7
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

4090..5628
DNA (1539bp) protein (513aa)
Iron only hydrogenase large subunit, C-terminal domain (EC:1.12.7.2)
Fe-hydrogenase large subunit family protein n=2 Tax=root RepID=R5AYJ1_9FIRM
Fe-hydrogenase large subunit family protein {ECO:0000313|EMBL:CCX45837.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L1_008_000M1_scaffold_163_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5821..7323
DNA (1503bp) protein (501aa)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I551_9FIRM
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:CDB41604.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
IMP dehydrogenase
L1_008_000M1_scaffold_163_9
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

7408..8016
DNA (609bp) protein (203aa)
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AR17_9FIRM
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:CCX45835.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
RNA polymerase ECF-type sigma factor
L1_008_000M1_scaffold_163_10
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

8009..9499
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AV31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45834.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L1_008_000M1_scaffold_163_11
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(9553..10218)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AS80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45833.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L1_008_000M1_scaffold_163_12
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(10236..11489)
DNA (1254bp) protein (418aa)
amidohydrolase (EC:3.5.1.47)
Amidohydrolase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AYI6_9FIRM
Amidohydrolase {ECO:0000313|EMBL:CCX45832.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L1_008_000M1_scaffold_163_13
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

11624..12433
DNA (810bp) protein (270aa)
Short-chain dehydrogenases of various substrate specificities n=2 Tax=root RepID=R5B2Z5_9FIRM
Short-chain dehydrogenases of various substrate specificities {ECO:0000313|EMBL:CCX45831.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Short-chain dehydrogenases of various substrate specificities
L1_008_000M1_scaffold_163_14
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(12771..13277)
DNA (507bp) protein (169aa)
Acetyltransferase (GNAT) family protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AR12_9FIRM
Acetyltransferase (GNAT) family protein {ECO:0000313|EMBL:CCX45830.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
putative acetyltransferase
L1_008_000M1_scaffold_163_15
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(13291..13983)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AV25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45829.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L1_008_000M1_scaffold_163_16
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(13980..14414)
DNA (435bp) protein (145aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
RNase HI (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AS73_9FIRM
L1_008_000M1_scaffold_163_17
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists


comp(14411..16915)
DNA (2505bp) protein (835aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AYI2_9FIRM
L1_008_000M1_scaffold_163_18
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(16930..18861)
DNA (1932bp) protein (644aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B2Z0_9FIRM
L1_008_000M1_scaffold_163_19
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(18891..19160)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AR08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45825.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L1_008_000M1_scaffold_163_20
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(19160..20260)
DNA (1101bp) protein (367aa)
DNA replication and repair protein RecF n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AV21_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
recF; DNA replication and repair protein RecF
L1_008_000M1_scaffold_163_21
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(20257..20472)
DNA (216bp) protein (72aa)
S4 domain protein YaaA n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AS69_9FIRM
S4 domain protein YaaA {ECO:0000313|EMBL:CCX45823.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
RNA-binding S4 domain-containing protein
L1_008_000M1_scaffold_163_22
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(20496..21602)
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
dnaN; DNA polymerase III beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=2 Tax=root RepID=R5AYH5_9FIRM
L1_008_000M1_scaffold_163_23
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(21844..23166)
DNA (1323bp) protein (441aa)
Chromosomal replication initiator protein DnaA n=4 Tax=root RepID=R5B2Y4_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
dnaA; chromosomal replication initiator protein DnaA
L1_008_000M1_scaffold_163_24
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

23375..26893
DNA (3519bp) protein (1173aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
mfd; transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=2 Tax=root RepID=R5AR03_9FIRM
L1_008_000M1_scaffold_163_25
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

26931..28115
DNA (1185bp) protein (395aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
PPIC-type PPIASE domain protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AV14_9FIRM
putative peptidyl-prolyl cis-trans isomerase
L1_008_000M1_scaffold_163_26
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(28175..28639)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AS66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45818.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L1_008_000M1_scaffold_163_27
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

28791..30053
DNA (1263bp) protein (421aa)
Amidohydrolase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AYG9_9FIRM
Amidohydrolase {ECO:0000313|EMBL:CCX45817.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
conserved hypothetical protein
L1_008_000M1_scaffold_163_28
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(30166..30750)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B2X8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45816.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
transcriptional regulator, TetR family
L1_008_000M1_scaffold_163_29
unknown

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comp(30732..30824)
DNA (93bp) protein (31aa)

This feature has no annotations

L1_008_000M1_scaffold_163_30
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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30988..31329
DNA (342bp) protein (114aa)
UPF0473 protein HMPREF0984_01168 n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AQZ8_9FIRM
UPF0473 protein HMPREF0984_01168 {ECO:0000313|EMBL:CCX45815.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Displaying items 1-30 of 91 in total

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