ggKbase home page

L2_019_000M1_scaffold_36

Search features with annotation key words

Displaying items 1-30 of 195 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000M1_scaffold_36_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(349..1044)
DNA (696bp) protein (232aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7G8_9FIRM
RNA polymerase, sigma 27/28 subunit, RpsK/SigK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_019_000M1_scaffold_36_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1263..2657
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83110.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
permease
L2_019_000M1_scaffold_36_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2815..3240
DNA (426bp) protein (142aa)
Putative HTH-type transcriptional regulator IscR n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2U1_9FIRM
Putative HTH-type transcriptional regulator IscR {ECO:0000313|EMBL:CCX83107.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
BadM/Rrf2 family transcriptional regulator
L2_019_000M1_scaffold_36_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3699..5000
DNA (1302bp) protein (434aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:CBL15564.1}; EC=2.5.1.49 {ECO:0000313|EMBL:CBL15564.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
O-acetylhomoserine sulfhydrolase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7G9_9FIRM
L2_019_000M1_scaffold_36_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5037..5969
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
cysK; Cysteine synthase A (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSE1_9FIRM
L2_019_000M1_scaffold_36_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6085..6693
DNA (609bp) protein (203aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4M3_9FIRM
L2_019_000M1_scaffold_36_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6815..7111
DNA (297bp) protein (99aa)
30S ribosomal protein S6 n=2 Tax=Ruminococcus RepID=D4L7H0_9FIRM
SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_36_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7151..7651
DNA (501bp) protein (167aa)
Single-stranded DNA-binding protein n=2 Tax=Ruminococcus RepID=D4L7H1_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
single stranded DNA-binding protein (ssb)
L2_019_000M1_scaffold_36_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7697..7936
DNA (240bp) protein (80aa)
30S ribosomal protein S18 n=3 Tax=root RepID=D4L7H2_9FIRM
SSU ribosomal protein S18P
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_36_10

Not on your lists

8067..8339
DNA (273bp) protein (91aa)
DNA-damage-inducible protein J (Fragment) n=1 Tax=human gut metagenome RepID=K1RYI5_9ZZZZ
DNA-damage-inducible protein J {ECO:0000313|EMBL:EKC50403.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
toxin-antitoxin system, antitoxin component
L2_019_000M1_scaffold_36_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8336..8611
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2S9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83092.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_019_000M1_scaffold_36_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8782..9087
DNA (306bp) protein (102aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Ruminococcus RepID=D4L7H5_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL15570.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_019_000M1_scaffold_36_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9096..11591
DNA (2496bp) protein (832aa)
copper-(or silver)-translocating P-type ATPase (EC:3.6.3.4)
Copper-(Or silver)-translocating P-type ATPase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7H6_9FIRM
Copper-(Or silver)-translocating P-type ATPase {ECO:0000313|EMBL:CCX83088.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_36_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11778..12050
DNA (273bp) protein (91aa)
Addiction module antitoxin RelB/DinJ family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2S6_9FIRM
Addiction module antitoxin RelB/DinJ family {ECO:0000313|EMBL:CCX83087.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
addiction module antitoxin, RelB/DinJ family
L2_019_000M1_scaffold_36_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12037..12309
DNA (273bp) protein (91aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MK44_9FIRM
addiction module toxin, RelE/StbE family
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:CBL34127.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_019_000M1_scaffold_36_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12538..12843)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83085.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_019_000M1_scaffold_36_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12860..13105)
DNA (246bp) protein (82aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Ruminococcus RepID=D4L7H8_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCX83083.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_36_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13308..15677)
DNA (2370bp) protein (790aa)
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7H9_9FIRM
L2_019_000M1_scaffold_36_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15693..16745)
DNA (1053bp) protein (351aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS42_9FIRM
L2_019_000M1_scaffold_36_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17142..17684
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DW06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83079.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_36_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17689..18561
DNA (873bp) protein (291aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ADP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2R8_9FIRM
yjeF C-terminal region, hydroxyethylthiazole kinase-related
L2_019_000M1_scaffold_36_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18769..19344
DNA (576bp) protein (192aa)
Predicted HD superfamily hydrolase involved in NAD metabolism n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7I2_9FIRM
Predicted HD superfamily hydrolase involved in NAD metabolism
Predicted HD superfamily hydrolase involved in NAD metabolism {ECO:0000313|EMBL:CBL15577.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_019_000M1_scaffold_36_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19440..19871
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4K6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83076.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_019_000M1_scaffold_36_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19949..20470
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83075.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_019_000M1_scaffold_36_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20574..20921
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
mRNA interferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DW03_9FIRM
transcriptional modulator of MazE/toxin MazF
L2_019_000M1_scaffold_36_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21105..21773)
DNA (669bp) protein (223aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSA9_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCX83073.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
helix-turn-helix domain-containing protein
L2_019_000M1_scaffold_36_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21972..22598
DNA (627bp) protein (209aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73 5.4.2.1)
Fructose-2 6-bisphosphatase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2R6_9FIRM
Fructose-2 6-bisphosphatase {ECO:0000313|EMBL:CCX83072.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_36_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22700..23770
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-isopropylmalate dehydrogenase n=2 Tax=Ruminococcus RepID=D4L7I9_9FIRM
L2_019_000M1_scaffold_36_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23771..24505
DNA (735bp) protein (245aa)
Capsular polysaccharide biosynthesis protein (EC:3.1.3.48)
Capsular polysaccharide biosynthesis protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS36_9FIRM
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:CCX83070.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_36_30

Not on your lists

comp(24658..25089)
DNA (432bp) protein (144aa)
FeS cluster assembly scaffold protein NifU, Clostridium type n=3 Tax=root RepID=D4L7J0_9FIRM
FeS cluster assembly scaffold protein NifU, Clostridium type
FeS cluster assembly scaffold protein NifU, Clostridium type {ECO:0000313|EMBL:EKC51389.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Displaying items 1-30 of 195 in total

View Taxonomy