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L3_072_000M1_scaffold_5642

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_5642_1
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..395)
DNA (393bp) protein (131aa)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
DNA-directed RNA polymerase subunit beta' n=2 Tax=Clostridium RepID=D8GJ47_CLOLD
L3_072_000M1_scaffold_5642_2
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(433..2220)
DNA (1788bp) protein (596aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUM2_CLOCD
L3_072_000M1_scaffold_5642_3
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2217..4016)
DNA (1800bp) protein (600aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUM2_CLOCD
L3_072_000M1_scaffold_5642_4
Alistipes sp. CAG:831, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4545..5462)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:831 RepID=R5IFM3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCY35727.1}; TaxID=1262698 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:831.;"
hypothetical protein
L3_072_000M1_scaffold_5642_5
unknown

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comp(5485..5937)
DNA (453bp) protein (151aa)

This feature has no annotations

L3_072_000M1_scaffold_5642_6
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6130..7008)
DNA (879bp) protein (293aa)
aguB; N-carbamoylputrescine amidase (EC:3.5.1.53)
N-carbamoylputrescine amidase n=1 Tax=Eubacterium sp. CAG:202 RepID=R6NZ99_9FIRM
N-carbamoylputrescine amidase {ECO:0000313|EMBL:CDC03007.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
L3_072_000M1_scaffold_5642_7
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7001..8116)
DNA (1116bp) protein (372aa)
Putative agmatine deiminase {ECO:0000256|HAMAP-Rule:MF_01841}; EC=3.5.3.12 {ECO:0000256|HAMAP-Rule:MF_01841};; Agmatine iminohydrolase {ECO:0000256|HAMAP-Rule:MF_01841}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
agmatine deiminase (EC:3.5.3.12)
Putative agmatine deiminase n=1 Tax=Clostridium sp. CAG:81 RepID=R5G0L4_9CLOT
L3_072_000M1_scaffold_5642_8
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8131..9255)
DNA (1125bp) protein (375aa)
Carboxynorspermidine decarboxylase {ECO:0000313|EMBL:EXG84736.1}; EC=4.1.1.- {ECO:0000313|EMBL:EXG84736.1};; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HXM9_9FIRM
carboxynorspermidine decarboxylase
L3_072_000M1_scaffold_5642_9
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9252..10337)
DNA (1086bp) protein (362aa)
carboxynorspermidine dehydrogenase (EC:1.5.1.7)
Carboxynorspermidine dehydrogenase {ECO:0000313|EMBL:CBL41414.1}; EC=1.5.1.7 {ECO:0000313|EMBL:CBL41414.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Carboxynorspermidine dehydrogenase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GUC2_9FIRM
Displaying 9 items

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