ggKbase home page

LC_0.1_scaffold_283

Search features with annotation key words

Displaying items 1-30 of 49 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LC_0.1_scaffold_283_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(186..791)
DNA (606bp) protein (202aa)
AsnC/Lrp family transcriptional regulator n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YW62_METPS
Transcriptional regulator {ECO:0000313|EMBL:KCZ70364.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
AsnC/Lrp family transcriptional regulator
LC_0.1_scaffold_283_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

924..1667
DNA (744bp) protein (248aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYR3_THEOJ
Uncharacterized protein {ECO:0000313|EMBL:KCZ70363.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
4Fe-4S ferredoxin
LC_0.1_scaffold_283_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1654..1926
DNA (273bp) protein (91aa)
Uncharacterized conserved protein UCP006577 n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1L3Y8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KCZ70362.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_283_4
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1935..2504)
DNA (570bp) protein (190aa)
Uncharacterized protein id=3849609 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_32_17_curated
LC_0.1_scaffold_283_5
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(2501..3247)
DNA (747bp) protein (249aa)
VTC domain-containing protein id=4195016 bin=GWF2_Bacteroidetes_29_10 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes
VTC domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
LC_0.1_scaffold_283_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3617..4519
DNA (903bp) protein (301aa)
Probable cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable cyclic pyranopterin monophosphate synthase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E9Q8_METMS
GTP cyclohydrolase subunit MoaA
LC_0.1_scaffold_283_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4688..5029)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EA60_METEZ
B-block binding subunit of TFIIIC {ECO:0000313|EMBL:KCZ70421.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
LC_0.1_scaffold_283_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5031..5255)
DNA (225bp) protein (75aa)
Small nuclear ribonucleoprotein, LSM family n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I9S9_METCZ
Small nuclear ribonucleoprotein {ECO:0000313|EMBL:KCZ70422.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative snRNP Sm-like protein, Archaeal
LC_0.1_scaffold_283_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5293..6003)
DNA (711bp) protein (237aa)
Flavoprotein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSU9_METAC
Archaeoflavoprotein, MJ0208 family {ECO:0000313|EMBL:KCZ70423.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
flavoprotein
LC_0.1_scaffold_283_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6151..6975
DNA (825bp) protein (275aa)
Hypothetical membrane protein n=1 Tax=uncultured archaeon RepID=D1J976_9ARCH
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_283_trna_1
unknown

Not on your lists

comp(7139..7246)
DNA (108bp)
transferRNA Met
LC_0.1_scaffold_283_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7392..7760
DNA (369bp) protein (123aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BF52_METIK
Cupin domain-containing protein {ECO:0000313|EMBL:KCZ70434.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cupin
LC_0.1_scaffold_283_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7807..8232)
DNA (426bp) protein (142aa)
Putative ribonuclease VapC protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=U2DNN7_9EURY
PIN domain
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_283_13
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8229..8507)
DNA (279bp) protein (93aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_283_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8961..11036
DNA (2076bp) protein (692aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q469W2_METBF
LC_0.1_scaffold_283_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(11039..11221)
DNA (183bp) protein (61aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_283_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11410..11631)
DNA (222bp) protein (74aa)
Putative redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:KCZ71826.1}; EC=2.8.1.- {ECO:0000313|EMBL:KCZ71826.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SirA family protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXR7_FERPA
SirA family protein
LC_0.1_scaffold_283_17
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11772..13112
DNA (1341bp) protein (447aa)
16S rRNA m(5)C 967 methyltransferase id=3904934 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Fmu (Sun) domain-containing protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_283_18
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13133..13831)
DNA (699bp) protein (233aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI000376D45F
acylphosphatase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
LC_0.1_scaffold_283_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13957..14688)
DNA (732bp) protein (244aa)
ABC transporter, ATP-binding protein, putative n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AHF0_PYRYC
ABC-type phosphate transport system, ATPase component {ECO:0000313|EMBL:KCZ73100.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ABC transporter ATP-binding protein
LC_0.1_scaffold_283_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(14690..15424)
DNA (735bp) protein (245aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CRT5_9EURY
modB; molybdenum ABC transporter permease
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_283_21
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(15424..16296)
DNA (873bp) protein (291aa)
Extracellular solute-binding protein family 1 n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CJU8_DESK7
ABC transporter substrate-binding protein
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_283_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16394..16930)
DNA (537bp) protein (179aa)
Putative transcriptional regulator, ModE family n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQL9_METZD
Molybdenum-pterin binding domain {ECO:0000313|EMBL:KCZ73097.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative ModE family transcriptional regulator
LC_0.1_scaffold_283_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17021..17320)
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73096.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_283_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17320..17544)
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73095.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LC_0.1_scaffold_283_25
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(17638..18630)
DNA (993bp) protein (331aa)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4ME74_9EURY
phosphoribosylaminoimidazole synthetase
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_283_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

19027..19848
DNA (822bp) protein (274aa)
UPI0003D1B072 related cluster n=1 Tax=unknown RepID=UPI0003D1B072
hisF; imidazole glycerol phosphate synthase subunit HisF
Tax=RBG_16_Euryarchaeota_41_19_curated
LC_0.1_scaffold_283_27
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19887..20417)
DNA (531bp) protein (177aa)
Formaldehyde activating enzyme {ECO:0000313|EMBL:ETA68485.1}; EC=4.3.-.- {ECO:0000313|EMBL:ETA68485.1};; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
UPI0003D1BE46 related cluster n=1 Tax=unknown RepID=UPI0003D1BE46
Formaldehyde activating enzyme
LC_0.1_scaffold_283_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(20903..22174)
DNA (1272bp) protein (424aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E742_METMS
LC_0.1_scaffold_283_29
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22276..23241
DNA (966bp) protein (322aa)
Na-Ca exchanger/integrin-beta4 n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UB10_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KCZ72119.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
filamentous hemagglutinin family outer membrane protein
Displaying items 1-30 of 49 in total

View Taxonomy