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NECEvent2014_2_3_scaffold_14

Alias: 172_003_scaffold_14

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_14_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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191..460
DNA (270bp) protein (90aa)
DHHA1 domain protein n=1 Tax=Clostridium difficile Y155 RepID=T4CU28_CLODI
RNA-binding protein
Putative rna-binding protein {ECO:0000313|EMBL:CEJ97892.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_14_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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473..1378
DNA (906bp) protein (302aa)
truB; transfer RNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B n=184 Tax=Clostridium difficile RepID=TRUB_CLOD6 rbh
NECEvent2014_2_3_scaffold_14_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1509..2438
DNA (930bp) protein (310aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1496 species="Bacteria; Firmicutes; Cl
Riboflavin biosynthesis protein RibF n=195 Tax=Clostridium difficile RepID=T3HS51_CLODC rbh
ribC; Riboflavin biosynthesis protein
NECEvent2014_2_3_scaffold_14_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2542..2799
DNA (258bp) protein (86aa)
30S ribosomal protein S15 n=221 Tax=Clostridium difficile RepID=RS15_CLOD6
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_14_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3039..3884
DNA (846bp) protein (282aa)
EDD, DegV family domain protein n=170 Tax=Clostridium difficile RepID=C9XPH9_CLODC rbh
hypothetical protein
EDD, DegV family domain protein {ECO:0000313|EMBL:EQE67289.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_14_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4009..6120
DNA (2112bp) protein (704aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1496 s
Polyribonucleotide nucleotidyltransferase n=189 Tax=Clostridium difficile RepID=PNP_CLOD6 rbh
polynucleotide phosphorylase/polyadenylase
NECEvent2014_2_3_scaffold_14_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6388..7131
DNA (744bp) protein (248aa)
Glycosyl hydrolase 57 family protein n=182 Tax=Clostridium difficile RepID=C9XPI1_CLODC rbh
polysaccharide deacetylase
Glycosyl hydrolase 57 family protein {ECO:0000313|EMBL:EQE67277.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclos
NECEvent2014_2_3_scaffold_14_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7289..8536
DNA (1248bp) protein (416aa)
Peptidase M16 inactive domain protein n=114 Tax=Clostridium difficile RepID=T3HUS7_CLODC rbh
M16 family peptidase
Putative peptidase, M16 family {ECO:0000313|EMBL:CCL29391.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_14_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8571..8816
DNA (246bp) protein (82aa)
Sporulation , YlmC/YmxH family protein n=177 Tax=Clostridium difficile RepID=C9XPI3_CLODC
hypothetical protein
Putative sporulation protein {ECO:0000313|EMBL:CCL01281.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_14_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8826..10049
DNA (1224bp) protein (408aa)
dapG; Aspartokinase 1 (Aspartokinase I) (1spartatekinase I) (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
Aspartokinase n=190 Tax=Clostridium difficile RepID=T3HQ96_CLODC rbh
NECEvent2014_2_3_scaffold_14_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10162..10896
DNA (735bp) protein (245aa)
Peptidase S49 family protein n=152 Tax=Clostridium difficile RepID=C9XPI5_CLODC rbh
translocation-enhancing protein TepA
Protein export-enhancing factor {ECO:0000313|EMBL:CCL29394.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_14_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11019..13430
DNA (2412bp) protein (804aa)
FtsK/SpoIIIE family protein n=150 Tax=Clostridium difficile RepID=T3HU02_CLODC rbh
DNA FtsK/SpoIIIE translocase {ECO:0000313|EMBL:CAJ68182.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium d
ftsK; DNA FtsK/SpoIIIE translocase
NECEvent2014_2_3_scaffold_14_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13433..14491
DNA (1059bp) protein (353aa)
tRNA 2-selenouridine synthase n=26 Tax=Clostridium difficile RepID=T3HUT3_CLODC rbh
Rhodanese-like domainprotein; putative tRNA 2-selenouridinesynthase,selenophosphate-dependent
Putative tRNA 2-selenouridine synthase,selenophosphate-dependent Rhodanese-like domain protein {ECO:0000313|EMBL:CAJ68183.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pep
NECEvent2014_2_3_scaffold_14_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14485..15819
DNA (1335bp) protein (445aa)
rimO; Ribosomal protein S12 methylthiotransferase (EC:2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO n=26 Tax=Clostridium difficile RepID=RIMO_CLOD6 rbh
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
NECEvent2014_2_3_scaffold_14_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15806..16348
DNA (543bp) protein (181aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CKH00715.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CKH00715.1};; CDP-diacylglycerol--glycerol-3-phosphate3-phosph atidyltran
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=132 Tax=Clostridium difficile RepID=C9XPI9_CLODC rbh
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
NECEvent2014_2_3_scaffold_14_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16636..17682
DNA (1047bp) protein (349aa)
Protein RecA n=158 Tax=Clostridium difficile RepID=RECA_CLOD6 rbh
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=997827 species="Bacteria; Firmicute
100% to Peptoclostridium difficile, 99% to C. difficile Jill Banfield (7/8/14)
NECEvent2014_2_3_scaffold_14_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17837..19399
DNA (1563bp) protein (521aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1225722 species="Bacteria; Firmicutes; Clostrid
Ribonuclease Y n=38 Tax=Clostridium difficile RepID=D5Q5X9_CLODI rbh
phosphodiesterase
NECEvent2014_2_3_scaffold_14_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20034..21815
DNA (1782bp) protein (594aa)
UvrD/REP helicase N-terminal domain protein n=16 Tax=Clostridium difficile RepID=T3C277_CLODI rbh
Putative DNA helicase, UvrD/REP type {ECO:0000313|EMBL:CAJ68188.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
putative DNA helicase, UvrD/REP type
NECEvent2014_2_3_scaffold_14_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21897..22427)
DNA (531bp) protein (177aa)
sip3; Signal peptidase I, S26A family (EC:3.4.21.89)
Signal peptidase I, S26A family {ECO:0000313|EMBL:CAJ68189.1}; EC=3.4.21.89 {ECO:0000313|EMBL:CAJ68189.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
Signal peptidase I n=15 Tax=Clostridium difficile RepID=T3HSQ0_CLODC rbh
NECEvent2014_2_3_scaffold_14_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22467..23291)
DNA (825bp) protein (275aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphat
uppP1; Undecaprenyl-diphosphatase 1 (Undecaprenylpyrophosphate phosphatase 1) (Bacitracin resistanceprotein 1) (EC:3.6.1.27)
Undecaprenyl-diphosphatase 1 n=10 Tax=Clostridium difficile RepID=UPPP1_CLOD6 rbh
NECEvent2014_2_3_scaffold_14_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23548..24456
DNA (909bp) protein (303aa)
Phage integrase family protein n=216 Tax=Clostridium difficile RepID=T3HQW8_CLODC rbh
tyrosine recombinase
Putative phage tyrosine recombinase {ECO:0000313|EMBL:CCL29404.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
NECEvent2014_2_3_scaffold_14_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24600..26045
DNA (1446bp) protein (482aa)
purB; Adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
Adenylosuccinate lyase n=151 Tax=Clostridium difficile RepID=T3HP08_CLODC rbh
NECEvent2014_2_3_scaffold_14_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26356..26808
DNA (453bp) protein (151aa)
MarR family protein n=211 Tax=Clostridium difficile RepID=C9XPJ7_CLODC
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCL29406.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_14_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27220..28797
DNA (1578bp) protein (526aa)
PTS system, glucose-like IIBC component (EC:2.7.1.69)
PTS system, glucose-like IIBC component {ECO:0000313|EMBL:CAJ68194.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CAJ68194.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoco
PTS system, glucose-like IIB component domain protein n=26 Tax=Clostridium difficile RepID=T3HNY0_CLODC rbh
NECEvent2014_2_3_scaffold_14_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28945..29697
DNA (753bp) protein (251aa)
Helix-turn-helix domain, rpiR family protein n=101 Tax=Clostridium difficile RepID=C9XPJ9_CLODC rbh
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CAJ68195.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
NECEvent2014_2_3_scaffold_14_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29830..31176
DNA (1347bp) protein (449aa)
Maltose-6'-phosphate glucosidase {ECO:0000313|EMBL:CKH01021.1}; EC=3.2.1.- {ECO:0000313|EMBL:CKH01021.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; P
Maltose-6'-phosphate glucosidase n=33 Tax=Clostridium difficile RepID=C9XPK0_CLODC rbh
glvG; maltose-6'-phosphate glucosidase
NECEvent2014_2_3_scaffold_14_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31288..32484)
DNA (1197bp) protein (399aa)
Aminotransferase class I and II family protein n=203 Tax=Clostridium difficile RepID=C9XPK1_CLODC rbh
aspartate aminotransferase
Aminotransferase class I and II family protein {ECO:0000313|EMBL:EQI86448.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source=
NECEvent2014_2_3_scaffold_14_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32869..33819
DNA (951bp) protein (317aa)
putative galactose-1-phosphateuridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:EQE67243.1}; EC=2.7.7.10 {ECO:0000313|EMBL:EQE67243.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrept
Galactose-1-phosphate uridylyltransferase n=134 Tax=Clostridium difficile RepID=T3HML9_CLODC rbh
NECEvent2014_2_3_scaffold_14_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33979..34731
DNA (753bp) protein (251aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EQE67253.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EQE67253.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pepto
Exodeoxyribonuclease III n=201 Tax=Clostridium difficile RepID=T3HSL4_CLODC rbh
exoA; exodeoxyribonuclease
NECEvent2014_2_3_scaffold_14_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34823..35599)
DNA (777bp) protein (259aa)
Exonuclease {ECO:0000313|EMBL:CKH01126.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CKH01126.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
Exonuclease family protein n=28 Tax=Clostridium difficile RepID=T3HTA5_CLODC rbh
ribonuclease
Displaying items 1-30 of 118 in total

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