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NECEvent2014_2_3_scaffold_54

Alias: 172_003_scaffold_54

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_54_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19..648)
DNA (630bp) protein (210aa)
Uncharacterized protein n=128 Tax=Clostridium difficile RepID=T3G4S0_CLODC rbh
conserved hypothetical protein
Domain of uncharacterised function (DUF3786) {ECO:0000313|EMBL:CKG77061.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99974.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
NECEvent2014_2_3_scaffold_54_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

959..1618
DNA (660bp) protein (220aa)
Response regulator n=156 Tax=Clostridium difficile RepID=C9XRS0_CLODC rbh
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CAJ70217.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_54_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1829..2887
DNA (1059bp) protein (353aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=G6BAF8_CLODI rbh
hypothetical protein
TIGR00374 family protein {ECO:0000313|EMBL:EQG73774.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_54_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3138..3554
DNA (417bp) protein (139aa)
Formate dehydrogenase-H (Selenocysteine) {ECO:0000313|EMBL:CEJ99971.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CEJ99971.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococc
Formate dehydrogenase h n=6 Tax=Clostridium difficile RepID=C9XRR8_CLODC
fdhF; formate dehydrogenase h
NECEvent2014_2_3_scaffold_54_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3603..5282
DNA (1680bp) protein (560aa)
Formate dehydrogenase-H (Selenocysteine) {ECO:0000313|EMBL:CEJ99971.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CEJ99971.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococc
fdhF; Formate dehydrogenase-H (selenocysteine) (EC:1.2.1.2)
Formate dehydrogenase-H (Selenocysteine) n=259 Tax=Clostridium difficile RepID=Q180G2_CLOD6 rbh
NECEvent2014_2_3_scaffold_54_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5331..6164
DNA (834bp) protein (278aa)
Protein FdhD homolog n=23 Tax=Clostridium difficile RepID=T3G5R7_CLODC rbh
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffici
fdhD; formate dehydrogenase accessory protein
NECEvent2014_2_3_scaffold_54_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6133..6348
DNA (216bp) protein (72aa)
Uncharacterized protein n=41 Tax=Clostridium difficile RepID=T3G4T0_CLODC
Uncharacterised protein {ECO:0000313|EMBL:CKG77223.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficil
hypothetical protein
NECEvent2014_2_3_scaffold_54_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6406..6957
DNA (552bp) protein (184aa)
4Fe-4S binding domain protein n=129 Tax=Clostridium difficile RepID=C9XRR5_CLODC rbh
hydN2; electron transport protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQE59308.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_54_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6982..8358
DNA (1377bp) protein (459aa)
Iron hydrogenase {ECO:0000313|EMBL:CCK88705.1}; EC=1.12.7.2 {ECO:0000313|EMBL:CCK88705.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
Iron hydrogenase n=191 Tax=Clostridium difficile RepID=Q180F8_CLOD6 rbh
hydA; hydrogenase
NECEvent2014_2_3_scaffold_54_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8358..8873
DNA (516bp) protein (172aa)
4Fe-4S binding domain protein n=50 Tax=Clostridium difficile RepID=T3G3E9_CLODC rbh
hydN1; putative oxidoreductase, Fe-S subunit
Electron transport protein {ECO:0000313|EMBL:CKG77319.1}; Putative oxidoreductase, Fe-S subunit {ECO:0000313|EMBL:CEJ99966.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pept
NECEvent2014_2_3_scaffold_54_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8951..10234)
DNA (1284bp) protein (428aa)
Sugar (And other) transporter family protein n=142 Tax=Clostridium difficile RepID=T3G0V2_CLODC rbh
Transporter, Major Facilitator Superfamily(MFS)
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CCL31589.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sourc
NECEvent2014_2_3_scaffold_54_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10422..10844
DNA (423bp) protein (141aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T3G1N1_CLODC
conserved hypothetical protein
Domain of uncharacterised function (DUF3783) {ECO:0000313|EMBL:CKG77372.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99964.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
NECEvent2014_2_3_scaffold_54_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10946..11884
DNA (939bp) protein (313aa)
D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CKG77380.1}; EC=1.-.-.- {ECO:0000313|EMBL:CKG77380.1};; Putative D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CDS8506
NAD binding domain of 6-phosphogluconate dehydrogenase family protein n=192 Tax=Clostridium difficile RepID=C9XRR0_CLODC rbh
D-isomer specific 2-hydroxyacid dehydrogenase
NECEvent2014_2_3_scaffold_54_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12070..14094
DNA (2025bp) protein (675aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000313|EMBL:CBE07046.1}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; T
DNA ligase n=13 Tax=Clostridium difficile RepID=DNLJ_CLOD6 rbh
dnaL; DNA ligase
NECEvent2014_2_3_scaffold_54_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14254..15603
DNA (1350bp) protein (450aa)
rph; Bifunctional enzyme, tRNA nucleotidyltransferase; Nucleoside-triphosphatase (EC:2.7.7.56 3.6.1.15)
Ribonuclease PH {ECO:0000256|SAAS:SAAS00104182}; EC=2.7.7.56 {ECO:0000256|SAAS:SAAS00104188};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
Ribonuclease PH n=15 Tax=Clostridium difficile RepID=T3G1P4_CLODC rbh
NECEvent2014_2_3_scaffold_54_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15603..16073
DNA (471bp) protein (157aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
Phosphodiesterase, MJ0936 family protein n=112 Tax=Clostridium difficile RepID=C9XRQ7_CLODC rbh
phosphoesterase
NECEvent2014_2_3_scaffold_54_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16267..17553
DNA (1287bp) protein (429aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
Trigger factor n=170 Tax=Clostridium difficile RepID=TIG_CLOD6 rbh
tig; Trigger factor (TF)
NECEvent2014_2_3_scaffold_54_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17703..18287
DNA (585bp) protein (195aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit n=192 Tax=Clostridium difficile RepID=C9XRQ5_CLODC rbh
clpP1; ATP-dependent Clp protease proteolytic subunit
NECEvent2014_2_3_scaffold_54_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18306..19556
DNA (1251bp) protein (417aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=208 Tax=Clostridium difficile RepID=CLPX_CLOD6 rbh
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrep
NECEvent2014_2_3_scaffold_54_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19627..20154)
DNA (528bp) protein (176aa)
Chromate transport protein n=210 Tax=Clostridium difficile RepID=C9XRQ3_CLODC rbh
chromate transport protein
Chromate transport protein {ECO:0000313|EMBL:CBE07035.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_54_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20142..20654)
DNA (513bp) protein (171aa)
Chromate transport protein n=204 Tax=Clostridium difficile RepID=C9XRQ2_CLODC rbh
chromate transport protein
Chromate transport protein ChrA {ECO:0000313|EMBL:CCK99791.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_54_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20834..23197
DNA (2364bp) protein (788aa)
lon; ATP-dependent protease La, S16 peptidase family (EC:3.4.21.53)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
Lon protease n=52 Tax=Clostridium difficile RepID=LON_CLOD6 rbh
NECEvent2014_2_3_scaffold_54_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23187..23798
DNA (612bp) protein (204aa)
Probable GTP-binding protein EngB n=221 Tax=Clostridium difficile RepID=ENGB_CLOD6 rbh
engB; GTP-binding protein YsxC
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
NECEvent2014_2_3_scaffold_54_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24063..25433)
DNA (1371bp) protein (457aa)
H+ antiporter-2 family protein n=130 Tax=Clostridium difficile RepID=T3G0W0_CLODC rbh
Transporter, Major Facilitator Superfamily(MFS)
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CCL23761.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sourc
NECEvent2014_2_3_scaffold_54_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26011..27090
DNA (1080bp) protein (360aa)
Archaeal ATPase family protein n=186 Tax=Clostridium difficile RepID=T3G1N5_CLODC rbh
putative ATP/GTP-binding protein
Archaeal ATPase family protein {ECO:0000313|EMBL:EQG73720.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_54_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27482..28162
DNA (681bp) protein (227aa)
Uncharacterized protein n=183 Tax=Clostridium difficile RepID=Q180E1_CLOD6 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31573.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_54_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28191..29534
DNA (1344bp) protein (448aa)
Type II/IV secretion system family protein n=76 Tax=Clostridium difficile RepID=T4G2K1_CLODI rbh
putative pilus assembly ATPase
Putative pilus assembly ATPase {ECO:0000313|EMBL:CEJ99949.1}; Type IV pilus-assembly protein {ECO:0000313|EMBL:CKG77735.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptost
NECEvent2014_2_3_scaffold_54_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29705..30790
DNA (1086bp) protein (362aa)
Type II secretion system (T2SS), F family protein n=44 Tax=Clostridium difficile RepID=T2T8B7_CLODI rbh
type IV pilus-assembly protein
Putative type IV pilus-assembly protein {ECO:0000313|EMBL:CBE07020.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_54_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30844..31203
DNA (360bp) protein (120aa)
Putative type IV pilin n=58 Tax=Clostridium difficile RepID=C9XRP4_CLODC
type IV pilin
Putative type IV pilin {ECO:0000313|EMBL:CDS85101.1}; Putative type IV pilin PilA {ECO:0000313|EMBL:CEJ99947.1}; Type IV pilin {ECO:0000313|EMBL:CKG77798.1}; TaxID=1496 species="Bacteria; Firmicutes;
NECEvent2014_2_3_scaffold_54_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31256..32128
DNA (873bp) protein (291aa)
Uncharacterized protein n=48 Tax=Clostridium difficile RepID=T2UUP9_CLODI rbh
putative pilus assembly protein
Putative pilus assembly protein {ECO:0000313|EMBL:CEJ99946.1}; Type IV pilus assembly protein PilM {ECO:0000313|EMBL:CKG77834.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; P
Displaying items 1-30 of 59 in total

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