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NECEvent2014_2_3_scaffold_65

Alias: 172_003_scaffold_65

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_65_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(223..1062)
DNA (840bp) protein (280aa)
PTS system mannose/fructose/sorbose IID component family protein n=39 Tax=Clostridium difficile RepID=T3ICS4_CLODC rbh
PTS system, mannose/fructose/sorbose IIDcomponent
PTS system transporter subunit IID {ECO:0000313|EMBL:CKH69364.1}; PTS system, mannose/fructose/sorbose IIDcomponent {ECO:0000313|EMBL:CEJ97020.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia;
NECEvent2014_2_3_scaffold_65_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1086..1844)
DNA (759bp) protein (253aa)
PTS system sorbose-specific iic component family protein n=137 Tax=Clostridium difficile RepID=T3IE33_CLODC rbh
PTS system mannose/fructose/sorbose transporter subunit IIC
PTS system%2C IIc component {ECO:0000313|EMBL:CKH69399.1}; PTS system, mannose/fructose/sorbose IIC component {ECO:0000313|EMBL:CDS83630.1}; PTS system, mannose/fructose/sorbose IICcomponent {ECO:0000
NECEvent2014_2_3_scaffold_65_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1891..2364)
DNA (474bp) protein (158aa)
PTS system, mannose/fructose/sorbose IIBcomponent (EC:2.7.1.69)
PTS system transporter subunit IIB {ECO:0000313|EMBL:CKH69427.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CKH69427.1};; PTS system, mannose/fructose/sorbose IIBcomponent {ECO:0000313|EMBL:CEJ97018.1}; EC=2.7.1.
PTS system sorbose subIIB component family protein n=102 Tax=Clostridium difficile RepID=T3IFQ2_CLODC rbh
NECEvent2014_2_3_scaffold_65_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2393..2800)
DNA (408bp) protein (136aa)
PTS system fructose IIA component family protein n=151 Tax=Clostridium difficile RepID=T3IJ10_CLODC
PTS system, mannose/fructose/sorbose IIAcomponent
PTS system fructose IIA component family protein {ECO:0000313|EMBL:EQG77842.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sourc
NECEvent2014_2_3_scaffold_65_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2856..3908)
DNA (1053bp) protein (351aa)
sugar-phosphate dehydrogenase (EC:1.1.1.-)
Putative sugar-phosphate dehydrogenase {ECO:0000313|EMBL:CAJ67319.1}; EC=1.1.1.- {ECO:0000313|EMBL:CAJ67319.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococc
Zinc-binding dehydrogenase family protein n=8 Tax=Clostridium difficile RepID=T3IHX7_CLODC rbh
NECEvent2014_2_3_scaffold_65_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4304..4984
DNA (681bp) protein (227aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=189 Tax=Clostridium difficile RepID=C9XKE8_CLODC rbh
phosphoribosylaminoimidazole-succinocarboxamide synthase
Phosphoribosylaminoimidazolesuccinocarboxamide synthase {ECO:0000313|EMBL:EHJ33586.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;"
NECEvent2014_2_3_scaffold_65_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5117..5437)
DNA (321bp) protein (107aa)
Quaternary ammonium compound-resistance protein n=204 Tax=Clostridium difficile RepID=C9XKE7_CLODC
sugE; quaternary ammonium compound-resistance protein
Putative small multidrug resistance SugE-like protein {ECO:0000313|EMBL:CCL32158.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;"
NECEvent2014_2_3_scaffold_65_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5819..6646
DNA (828bp) protein (276aa)
Carbon-nitrogen hydrolase {ECO:0000313|EMBL:CKH69583.1}; EC=3.5.1.100 {ECO:0000313|EMBL:CKH69583.1};; Putative carbon-nitrogen hydrolase {ECO:0000313|EMBL:CEJ97013.1}; TaxID=1496 species="Bacteria; Fi
Omega-amidase NIT2 n=5 Tax=Clostridium difficile RepID=T2U5J5_CLODI rbh
carbon-nitrogen hydrolase
NECEvent2014_2_3_scaffold_65_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7468..8142
DNA (675bp) protein (225aa)
Transcriptional regulatory family protein n=6 Tax=Clostridium difficile RepID=T3IJ66_CLODC rbh
two-component response regulator rbh
Two-component response regulator {ECO:0000313|EMBL:CEJ97012.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_65_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8130..9290
DNA (1161bp) protein (387aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656, ECO:0000313|EMBL:CKH69642.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptos
HAMP domain protein n=6 Tax=Clostridium difficile RepID=T3II35_CLODC rbh
Two-component sensor histidine kinase
NECEvent2014_2_3_scaffold_65_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9465..10133
DNA (669bp) protein (223aa)
ABC-type transport system, ATP-binding protein (EC:3.6.3.-)
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CKH69680.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKH69680.1};; ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CEJ97010.1}; EC=3.6.3.- {
ABC transporter family protein n=97 Tax=Clostridium difficile RepID=T3ICY0_CLODC rbh
NECEvent2014_2_3_scaffold_65_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10136..12604
DNA (2469bp) protein (823aa)
ABC transporter permease {ECO:0000313|EMBL:CKH69707.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKH69707.1};; ABC-type transport system, permease {ECO:0000313|EMBL:CEJ97009.1}; TaxID=1496 species="Bacteria; Firm
FtsX-like permease family protein n=7 Tax=Clostridium difficile RepID=T3IE99_CLODC rbh
ABC-type transport system, permease
NECEvent2014_2_3_scaffold_65_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12844..14268)
DNA (1425bp) protein (475aa)
spaK; Two-component sensor histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
HAMP domain protein n=78 Tax=Clostridium difficile RepID=T3IFW1_CLODC rbh
NECEvent2014_2_3_scaffold_65_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14287..14979)
DNA (693bp) protein (231aa)
Response regulator n=167 Tax=Clostridium difficile RepID=T3IJ59_CLODC rbh
lantibiotic resistance two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CCL32102.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
NECEvent2014_2_3_scaffold_65_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15034..15810)
DNA (777bp) protein (259aa)
Lantibiotic protection ABC transporter permease subunit, MutG family protein n=47 Tax=Clostridium difficile RepID=T3II32_CLODC rbh
spaG; ABC-type transportsystem,lantibiotic/multidrug-family permease
Lantibiotic protection ABC transporter permease subunit, MutG family protein {ECO:0000313|EMBL:EQG78029.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcacea
NECEvent2014_2_3_scaffold_65_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15807..16577)
DNA (771bp) protein (257aa)
Lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein n=73 Tax=Clostridium difficile RepID=C9XKD7_CLODC rbh
lantibiotic ABC transporter permease
ABC-type transport system,lantibiotic/multidrug-family permease {ECO:0000313|EMBL:CCL32100.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclost
NECEvent2014_2_3_scaffold_65_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16574..17278)
DNA (705bp) protein (235aa)
Lantibiotic protection ABC transporter, ATP-binding subunit n=149 Tax=Clostridium difficile RepID=T3IE94_CLODC rbh
spaF; ABC-type transportsystem,lantibiotic/multidrug-family ATP-binding protein
ABC-type transport system,lantibiotic/multidrug-family ATP-binding protein {ECO:0000313|EMBL:CAJ67307.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
NECEvent2014_2_3_scaffold_65_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17533..18045)
DNA (513bp) protein (171aa)
Uncharacterized protein n=16 Tax=Clostridium difficile RepID=T3IFV5_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ67306.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_65_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18371..18628
DNA (258bp) protein (86aa)
Uncharacterized protein n=23 Tax=Clostridium difficile RepID=T3IJ55_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL32097.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_65_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18771..19397
DNA (627bp) protein (209aa)
Uracil DNA glycosylase superfamily protein n=149 Tax=Clostridium difficile RepID=T3II27_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDS83686.1}; Uracil DNA glycosylase superfamily {ECO:0000313|EMBL:CKH69931.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrep
NECEvent2014_2_3_scaffold_65_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19647..20426)
DNA (780bp) protein (260aa)
4Fe-4S binding domain protein n=74 Tax=Clostridium difficile RepID=T3ICW9_CLODC rbh
putative iron-sulfur protein
Iron-sulfur protein {ECO:0000313|EMBL:CKH69955.1}; Putative iron-sulfur protein {ECO:0000313|EMBL:CEJ97000.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcacea
NECEvent2014_2_3_scaffold_65_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20494..20955)
DNA (462bp) protein (154aa)
MarR family protein n=7 Tax=Clostridium difficile RepID=T3PL24_CLODI rbh
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCL24212.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
MarR family transcriptional regulator
NECEvent2014_2_3_scaffold_65_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20931..21608)
DNA (678bp) protein (226aa)
Iron-sulfur flavoprotein CD630_04720 n=171 Tax=Clostridium difficile RepID=ISF_CLOD6 rbh
iron-sulfur flavoprotein
Iron-sulfur flavoprotein {ECO:0000313|EMBL:EQE69598.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_65_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21841..22227
DNA (387bp) protein (129aa)
Penicillinase repressor n=135 Tax=Clostridium difficile RepID=C9XKC9_CLODC
blaI; penicillinase repressor
Transcriptional regulator, Penicillinase repressor {ECO:0000313|EMBL:CCL24210.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sou
NECEvent2014_2_3_scaffold_65_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22230..24029
DNA (1800bp) protein (600aa)
blaR; Beta-lactamase-inducing penicillin-bindingprotein (EC:3.5.2.6)
Beta-lactamase-inducing penicillin-binding protein {ECO:0000313|EMBL:CKH70075.1}; Beta-lactamase-inducing penicillin-bindingprotein {ECO:0000313|EMBL:CEJ96996.1}; EC=3.5.2.6 {ECO:0000313|EMBL:CEJ96996
Beta-lactamase-inducing penicillin-binding protein n=15 Tax=Clostridium difficile RepID=Q188R3_CLOD6 rbh
NECEvent2014_2_3_scaffold_65_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24384..26258)
DNA (1875bp) protein (625aa)
PTS system sucrose-specific transporter subunit IIABC (EC:2.7.1.69)
PTS system, sucrose-specific IIABC component {ECO:0000313|EMBL:CAJ67297.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CAJ67297.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostre
PTS system, sucrose-specific IIABC component n=61 Tax=Clostridium difficile RepID=T3IG09_CLODC rbh
NECEvent2014_2_3_scaffold_65_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26263..27927)
DNA (1665bp) protein (555aa)
oligo-1,6-glucosidase (EC:3.2.1.10)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium
Alpha amylase, catalytic domain protein n=29 Tax=Clostridium difficile RepID=T3IJB3_CLODC rbh
NECEvent2014_2_3_scaffold_65_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27941..28762)
DNA (822bp) protein (274aa)
Cof-like hydrolase n=2 Tax=Clostridium difficile RepID=G6BR55_CLODI rbh
hydrolase
Putative hydrolase {ECO:0000313|EMBL:CBE02175.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (
NECEvent2014_2_3_scaffold_65_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28861..29625)
DNA (765bp) protein (255aa)
Helix-turn-helix domain, rpiR family protein n=125 Tax=Clostridium difficile RepID=T3ID23_CLODC rbh
Transcriptional regulator, RpiR family
RpiR family transcriptional regulator {ECO:0000313|EMBL:CKH70232.1}; Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CEJ96992.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostri
NECEvent2014_2_3_scaffold_65_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29622..30371)
DNA (750bp) protein (250aa)
Helix-turn-helix domain, rpiR family protein n=75 Tax=Clostridium difficile RepID=T3IEE5_CLODC rbh
Transcriptional regulator, RpiR family
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CCL24133.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
Displaying items 1-30 of 56 in total

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