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NECEvent2014_2_3_scaffold_187

Alias: 172_003_scaffold_187

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_187_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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67..2187
DNA (2121bp) protein (707aa)
AAA domain family protein n=54 Tax=Clostridium difficile RepID=T3GEI9_CLODC rbh
Transcriptional regulator, sigma-54-dependent {ECO:0000313|EMBL:CCL23094.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="
Transcriptional regulator, sigma-54-dependent
NECEvent2014_2_3_scaffold_187_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2412..3578
DNA (1167bp) protein (389aa)
Cystathionine beta-lyase PatB {ECO:0000313|EMBL:EQG74199.1}; EC=4.4.1.8 {ECO:0000313|EMBL:EQG74199.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; P
Cystathionine beta-lyase PatB n=6 Tax=Clostridium difficile RepID=T3GA17_CLODC rbh
aminotransferase
NECEvent2014_2_3_scaffold_187_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3603..5045
DNA (1443bp) protein (481aa)
Na+/H+ antiporter NhaC n=7 Tax=Clostridium difficile RepID=T3GEI3_CLODC rbh
putative Na+/H+ antiporter, NhaC family
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EQG74191.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_187_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5048..5317
DNA (270bp) protein (90aa)
Putative membrane protein n=111 Tax=Clostridium difficile RepID=T3GF70_CLODC
Putative membrane protein {ECO:0000313|EMBL:EQE60344.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
hypothetical protein
NECEvent2014_2_3_scaffold_187_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5394..6899)
DNA (1506bp) protein (502aa)
SH3 domain protein n=8 Tax=Clostridium difficile RepID=G6BTL3_CLODI rbh
cell surface protein
Cell surface protein {ECO:0000313|EMBL:CBE06094.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
NECEvent2014_2_3_scaffold_187_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7193..8062
DNA (870bp) protein (290aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=203 Tax=Clostridium difficile RepID=C9XNA7_CLODC rbh
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:CKH85508.1}; Transcriptional regulator, LysR family {ECO:0000313|EMBL:CEJ99363.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostri
NECEvent2014_2_3_scaffold_187_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8174..8980)
DNA (807bp) protein (269aa)
Carbon-nitrogen hydrolase family protein n=77 Tax=Clostridium difficile RepID=T3GB53_CLODC rbh
putative nitrilase/cyanide hydratase andapolipoprotein N-acyltransferase
Putative nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:CAJ69624.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; P
NECEvent2014_2_3_scaffold_187_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8994..10226)
DNA (1233bp) protein (411aa)
Permease for cytosine/purine, uracil, thiamine, allantoin family protein n=58 Tax=Clostridium difficile RepID=T3GA10_CLODC rbh
Putative cytosine permease {ECO:0000313|EMBL:CCL23101.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium di
cytosine permease
NECEvent2014_2_3_scaffold_187_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10685..12472)
DNA (1788bp) protein (596aa)
aspS; Aspartyl-tRNA synthetase (Aspartate--tRNAligase) (AspRS) (EC:6.1.1.12)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EQE60383.1}; EC=6.1.1.- {ECO:0000313|EMBL:EQE60383.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclo
Aspartate--tRNA ligase n=125 Tax=Clostridium difficile RepID=T3GF40_CLODC rbh
NECEvent2014_2_3_scaffold_187_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12546..13808)
DNA (1263bp) protein (421aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
Histidine--tRNA ligase n=166 Tax=Clostridium difficile RepID=SYH_CLOD6 rbh
hisS; histidyl-tRNA synthetase
NECEvent2014_2_3_scaffold_187_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13798..15354)
DNA (1557bp) protein (519aa)
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:EQE60371.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EQE60371.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoco
hemZ; coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=61 Tax=Clostridium difficile RepID=T2TUS1_CLODI rbh
NECEvent2014_2_3_scaffold_187_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15445..16059)
DNA (615bp) protein (205aa)
Metallo-beta-lactamase superfamily protein n=157 Tax=Clostridium difficile RepID=T3G9Z5_CLODC rbh
putative hydrolase beta-lactamase-like
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQG74216.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pep
NECEvent2014_2_3_scaffold_187_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16074..16523)
DNA (450bp) protein (150aa)
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcac
D-tyrosyl-tRNA(Tyr) deacylase n=190 Tax=Clostridium difficile RepID=DTD_CLOD6
NECEvent2014_2_3_scaffold_187_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16548..18755)
DNA (2208bp) protein (736aa)
GTP pyrophosphokinase (RelA/SpoT) {ECO:0000313|EMBL:CCK99237.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CCK99237.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcacea
GTP pyrophosphokinase (RelA/SpoT) n=201 Tax=Clostridium difficile RepID=Q183H8_CLOD6 rbh
GTP pyrophosphokinase
NECEvent2014_2_3_scaffold_187_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18829..19341)
DNA (513bp) protein (171aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000
Adenine phosphoribosyltransferase n=212 Tax=Clostridium difficile RepID=APT_CLOD6 rbh
adenine phosphoribosyltransferase
NECEvent2014_2_3_scaffold_187_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19354..21804)
DNA (2451bp) protein (817aa)
Single-stranded-DNA-specific exonuclease {ECO:0000313|EMBL:CAJ69633.1}; EC=3.1.-.- {ECO:0000313|EMBL:CAJ69633.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoco
recJ; Single-stranded-DNA-specific exonuclease (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease n=62 Tax=Clostridium difficile RepID=Q183I1_CLOD6 rbh
NECEvent2014_2_3_scaffold_187_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21817..23481)
DNA (1665bp) protein (555aa)
ABC1 family protein n=155 Tax=Clostridium difficile RepID=C9XNB8_CLODC rbh
Putative ubiquinone biosynthesis protein {ECO:0000313|EMBL:CAJ69634.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
ubiquinone biosynthesis protein
NECEvent2014_2_3_scaffold_187_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23779..24276)
DNA (498bp) protein (166aa)
Bacterial transferase hexapeptide family protein n=197 Tax=Clostridium difficile RepID=C9XNB9_CLODC rbh
transferase
Bacterial transferase hexapeptide family protein {ECO:0000313|EMBL:EQE60353.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sourc
NECEvent2014_2_3_scaffold_187_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24305..25684)
DNA (1380bp) protein (460aa)
Six-Cys-in-45 modification radical SAM protein n=136 Tax=Clostridium difficile RepID=G6B4H5_CLODI rbh
radical SAM protein
Putative radical SAM-family protein {ECO:0000313|EMBL:CEJ99376.1}; Radical SAM protein {ECO:0000313|EMBL:CKH85931.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoc
NECEvent2014_2_3_scaffold_187_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25989..26135)
DNA (147bp) protein (49aa)
Autoinducer prepeptide n=77 Tax=Clostridium difficile RepID=C9XNC1_CLODC
autoinducer prepeptide
Autoinducer prepeptide {ECO:0000313|EMBL:CCL31021.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_187_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26165..26743)
DNA (579bp) protein (193aa)
Accessory transciptional regulator B family protein n=7 Tax=Clostridium difficile RepID=T3GAZ8_CLODC rbh
agrB; accessory gene regulator
Accessory transciptional regulator B family protein {ECO:0000313|EMBL:EQE60333.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_3_scaffold_187_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27111..28541)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=150 Tax=Clostridium difficile RepID=Q183I8_CLOD6 rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE60357.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
Displaying 22 items

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