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NECEvent2014_2_3_scaffold_411

Alias: 172_003_scaffold_411

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_411_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(61..693)
DNA (633bp) protein (211aa)
sat; streptogramin A acetyltransferase (EC:2.3.1.-)
Streptogramin A acetyltransferase (Virginiamycin acetyltransferase D) (Vat(D)) {ECO:0000313|EMBL:CAJ69111.1}; EC=2.3.1.- {ECO:0000313|EMBL:CAJ69111.1};; TaxID=272563 species="Bacteria; Firmicutes; Clo
Streptogramin A acetyltransferase (Virginiamycin acetyltransferase D) (Vat(D)) n=176 Tax=Clostridium difficile RepID=Q186B4_CLOD6 rbh
NECEvent2014_2_3_scaffold_411_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(765..1118)
DNA (354bp) protein (118aa)
DNA binding domain of tn916 integrase n=13 Tax=Clostridium difficile RepID=G6BPV4_CLODI
Integrase {ECO:0000313|EMBL:CKH25536.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium
Site-specific recombinase XerD
NECEvent2014_2_3_scaffold_411_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1789..2019)
DNA (231bp) protein (77aa)
Uncharacterized protein n=81 Tax=Clostridium difficile RepID=G6BPV5_CLODI
hypothetical protein
Helix-turn-helix domain {ECO:0000313|EMBL:CKH25513.1}; Putative extrachromosomal origin protein {ECO:0000313|EMBL:CDS85821.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pept
NECEvent2014_2_3_scaffold_411_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2021..2515)
DNA (495bp) protein (165aa)
RNA polymerase sigma factor, sigma-70 family protein n=6 Tax=Clostridium difficile RepID=T2TYI1_CLODI rbh
putative extrachromosomal origin protein
Putative extrachromosomal origin protein {ECO:0000313|EMBL:CAJ69108.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_411_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3089..3199)
DNA (111bp) protein (37aa)
Acetyltransferase family protein n=7 Tax=Clostridium difficile RepID=T3P9G0_CLODI
putative extrachromosomal origin protein
Acetyltransferase {ECO:0000313|EMBL:CCL30441.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E
NECEvent2014_2_3_scaffold_411_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3213..4139)
DNA (927bp) protein (309aa)
Uncharacterized protein n=91 Tax=Clostridium difficile RepID=G6BPV9_CLODI rbh
putative extrachromosomal origin protein
Putative extrachromosomal origin protein {ECO:0000313|EMBL:CAJ69107.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_411_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4818..5438)
DNA (621bp) protein (207aa)
Cyclic nucleotide-binding domain protein n=197 Tax=Clostridium difficile RepID=G6BPW1_CLODI rbh
putative cyclic nucleotides-binding protein
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EQE62592.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pepto
NECEvent2014_2_3_scaffold_411_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5526..6224)
DNA (699bp) protein (233aa)
AAA-like domain protein n=7 Tax=Clostridium difficile RepID=T2TYH7_CLODI rbh
AAA-like domain protein {ECO:0000313|EMBL:EQH99027.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
hypothetical protein
NECEvent2014_2_3_scaffold_411_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6325..7140
DNA (816bp) protein (272aa)
Phage integrase family protein n=4 Tax=Clostridium difficile RepID=T4FI14_CLODI rbh
Integrase {ECO:0000313|EMBL:CKH25298.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium
Site-specific recombinase XerD
NECEvent2014_2_3_scaffold_411_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7812..8579
DNA (768bp) protein (256aa)
aroD; Dehydroquinate dehydratase (3-dehydroquinatedehydratase) (Dehydroquinase) (DHQase) (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214,
3-dehydroquinate dehydratase n=166 Tax=Clostridium difficile RepID=AROD_CLOD6 rbh
NECEvent2014_2_3_scaffold_411_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8907..9584)
DNA (678bp) protein (226aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=C9XL18_CLODC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE05197.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_411_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9734..10072)
DNA (339bp) protein (113aa)
Helix-turn-helix family protein n=1 Tax=Clostridium difficile CD69 RepID=T3A1Q6_CLODI
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCL22523.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
regulatory protein
NECEvent2014_2_3_scaffold_411_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10073..10411)
DNA (339bp) protein (113aa)
Helix-turn-helix family protein n=219 Tax=Clostridium difficile RepID=C9XL16_CLODC
regulatory protein
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCK98632.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
Displaying 13 items

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