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NECEvent2014_5_3_scaffold_358

Alias: 175_002_scaffold_358

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_3_scaffold_358_1
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

635..952
DNA (318bp) protein (106aa)
PTS system cellobiose-specific transporter subunit IIB (EC:2.7.1.69)
PTS system, Lactose/Cellobiose specific IIB subunit n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2DFN8_9FIRM
PTS system lactose/cellobiose family IIB component {ECO:0000313|EMBL:CCZ25209.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus;
NECEvent2014_5_3_scaffold_358_2
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1021..1947
DNA (927bp) protein (309aa)
Uncharacterized protein n=8 Tax=Enterococcus faecalis RepID=E0G0N8_ENTFL rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EEU16127.1}; TaxID=565642 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis ATC
PEP phosphonomutase family protein
NECEvent2014_5_3_scaffold_358_3
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1964..3274
DNA (1311bp) protein (437aa)
PTS system, cellobiose-specific IIC component n=24 Tax=Enterococcus faecalis RepID=K8F5B0_ENTFL rbh
PTS system, cellobiose-specific IIC component
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=565642 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis ATCC 4200.;
NECEvent2014_5_3_scaffold_358_4
Enterococcus durans, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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3368..4087
DNA (720bp) protein (240aa)
GntR family transcriptional regulator n=1 Tax=Enterococcus durans RepID=UPI00032871A9
GntR family transcriptional regulator {ECO:0000313|EMBL:EMS76754.1}; TaxID=1288492 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus durans
GntR family transcriptional regulator
NECEvent2014_5_3_scaffold_358_5
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4312..4632)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=U6Q1Q6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJZ50462.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
NECEvent2014_5_3_scaffold_358_6
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(4791..5201)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AZM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX46182.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
NECEvent2014_5_3_scaffold_358_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5318..6034)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BQ79_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT16088.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
NECEvent2014_5_3_scaffold_358_8
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6048..6563)
DNA (516bp) protein (172aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NIS6_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN37011.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
NECEvent2014_5_3_scaffold_358_9
unknown

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comp(6808..6954)
DNA (147bp) protein (49aa)

This feature has no annotations

NECEvent2014_5_3_scaffold_358_10
unknown

Not on your lists

comp(7100..7417)
DNA (318bp) protein (106aa)

This feature has no annotations

NECEvent2014_5_3_scaffold_358_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7746..7979
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSK5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30420.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
IS1470, transposase
NECEvent2014_5_3_scaffold_358_12
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8118..8573)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H1Z1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ87502.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
NECEvent2014_5_3_scaffold_358_13
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8695..9249)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UG33_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU21060.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 2
NECEvent2014_5_3_scaffold_358_14
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9302..9589)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI00028A2D50
Uncharacterized protein {ECO:0000313|EMBL:KEZ87074.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
NECEvent2014_5_3_scaffold_358_15
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9623..10951)
DNA (1329bp) protein (443aa)
multidrug transporter MATE n=1 Tax=Clostridium sp. JC122 RepID=UPI000288115F rbh
Multidrug transporter MATE {ECO:0000313|EMBL:KEZ87073.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
MATE efflux family protein
NECEvent2014_5_3_scaffold_358_16
unknown

Not on your lists

comp(11189..11311)
DNA (123bp) protein (41aa)

This feature has no annotations

NECEvent2014_5_3_scaffold_358_17
unknown

Not on your lists

comp(11350..12213)
DNA (864bp) protein (288aa)

This feature has no annotations

NECEvent2014_5_3_scaffold_358_18
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12532..12996)
DNA (465bp) protein (155aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGF4_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG29430.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] m
hypothetical protein
NECEvent2014_5_3_scaffold_358_19
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13097..13603)
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TSD8_CLOP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEZ91745.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
Displaying 19 items

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