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NECEvent2014_6_7_scaffold_393

Alias: 176_007_scaffold_393

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_7_scaffold_393_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..243)
DNA (243bp) protein (81aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TWY8_9CLOT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EKQ51552.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium s
ECF subfamily RNA polymerase sigma-24 factor
NECEvent2014_6_7_scaffold_393_2
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

358..885
DNA (528bp) protein (176aa)
Riboflavin biosynthesis protein RibD C-domain protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J3X8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ88242.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
dihydrofolate reductase family protein
NECEvent2014_6_7_scaffold_393_3
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1075..2292
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GJ01_EUBLK rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO35636.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612
NECEvent2014_6_7_scaffold_393_4
unknown

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2637..5336
DNA (2700bp) protein (900aa)
collagen-binding protein
NECEvent2014_6_7_scaffold_393_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5359..6894
DNA (1536bp) protein (512aa)
Putative surface protein n=1 Tax=Clostridium perfringens RepID=G5DSB4_CLOPF
Putative surface protein {ECO:0000313|EMBL:AEP94955.1}; TaxID=1502 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens.;"
collagen-binding protein
NECEvent2014_6_7_scaffold_393_6
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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6972..7823
DNA (852bp) protein (284aa)
Sortase family protein, LPXTG-site transpeptidase n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N1Z8_SLAHD
sortase, LPXTG-site transpeptidase
Sortase family protein, LPXTG-site transpeptidase {ECO:0000313|EMBL:ACV23439.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Sla
NECEvent2014_6_7_scaffold_393_7
Anoxybacillus flavithermus, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7828..8754
DNA (927bp) protein (309aa)
Extracellular collagen-binding protein, LPxTG anchor n=1 Tax=Anoxybacillus flavithermus TNO-09.006 RepID=M5JCP6_9BACI
Extracellular collagen-binding protein, LPxTG anchor {ECO:0000313|EMBL:ELK21320.1}; TaxID=1267580 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillu
hypothetical protein
NECEvent2014_6_7_scaffold_393_8
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8853..9509
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M156_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI99780.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
NECEvent2014_6_7_scaffold_393_9
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

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9708..12041
DNA (2334bp) protein (778aa)
Dnd system-associated protein 3 n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2DE78_9FIRM
Dnd system-associated protein 3 {ECO:0000313|EMBL:ERI94643.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
hypothetical protein
NECEvent2014_6_7_scaffold_393_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12045..13427
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQG5_CLOPF rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB76752.1}; TaxID=929506 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum BKT015925.;"
NECEvent2014_6_7_scaffold_393_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13408..18543
DNA (5136bp) protein (1712aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum BKT015925 RepID=F4A5S0_CLOBO rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB76751.1}; TaxID=929506 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum BKT015925.;"
NECEvent2014_6_7_scaffold_393_12
Paenibacillus sp. FSL R5-0345, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18889..20670
DNA (1782bp) protein (594aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V3G3_CLOBA rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ34708.1}; TaxID=1536770 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-0345.;"
NECEvent2014_6_7_scaffold_393_13
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20701..21879)
DNA (1179bp) protein (393aa)
cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase {ECO:0000313|EMBL:ADK14522.1}; EC=2.8.1.7 {ECO:0000313|EMBL:ADK14522.1};; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sou
Cysteine desulfurase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V3G1_CLOBA
NECEvent2014_6_7_scaffold_393_14
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21876..22265)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQG9_CLOPF
DNA sulfur modification protein DndE {ECO:0000313|EMBL:KGM98309.1}; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A s
hypothetical protein
NECEvent2014_6_7_scaffold_393_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22268..24424)
DNA (2157bp) protein (719aa)
DNA sulfur modification protein DndD n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQH0_CLOPF rbh
dndD; DNA sulfur modification protein DndD
DNA sulfur modification protein DndD {ECO:0000313|EMBL:ETI90592.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
NECEvent2014_6_7_scaffold_393_16
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24414..26039)
DNA (1626bp) protein (542aa)
Putative sulfurtransferase DndC n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQH1_CLOPF rbh
Sulfurtransferase DndC {ECO:0000313|EMBL:KGM98307.1}; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4552.;"
putative sulfurtransferase DndC
NECEvent2014_6_7_scaffold_393_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26042..27133)
DNA (1092bp) protein (364aa)
UPI0003D6637D related cluster n=1 Tax=unknown RepID=UPI0003D6637D
DNA sulfur modification protein DndB {ECO:0000313|EMBL:ETI90590.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
dndB; DNA sulfur modification protein DndB
NECEvent2014_6_7_scaffold_393_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27436..27657
DNA (222bp) protein (74aa)
HRDC domain protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQR6_CLOPF
HRDC domain-containing protein
HRDC domain protein {ECO:0000313|EMBL:EDS79562.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.
Displaying 18 items

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