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NECEvent2014_8_1_Clostridium_perfringens-rel_30_12

NECEvent2014_8_1_Clostridium_perfringens_31_10
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 251-300 of 731 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_3191 178_001_scaffold_3191
Species: Clostridium perfringens (100%)
2 1465 bp 28.94 7.17 91.74
NECEvent2014_8_1_scaffold_2630 178_001_scaffold_2630
Species: Clostridium perfringens (100%)
2 1788 bp 29.19 7.89 91.78
NECEvent2014_8_1_scaffold_4102 178_001_scaffold_4102
Species: Clostridium sp. IBUN22A (50%)
2 1134 bp 27.51 7.94 91.80
NECEvent2014_8_1_scaffold_2009 178_001_scaffold_2009
Species: Clostridium perfringens (100%)
2 2369 bp 35.08 15.45 91.81
NECEvent2014_8_1_scaffold_4550 178_001_scaffold_4550
Species: Clostridium perfringens (100%)
1 1016 bp 29.63 7.38 91.83
NECEvent2014_8_1_scaffold_4205 178_001_scaffold_4205
Species: Clostridium perfringens (100%)
1 1104 bp 30.62 6.79 91.85
NECEvent2014_8_1_scaffold_926 178_001_scaffold_926
Species: Clostridium perfringens (83.33%)
6 5048 bp 32.49 14.80 91.88
NECEvent2014_8_1_scaffold_1176 178_001_scaffold_1176
Species: Clostridium perfringens (100%)
5 4039 bp 30.77 8.39 91.88
NECEvent2014_8_1_scaffold_1634 178_001_scaffold_1634
Species: Clostridium perfringens (100%)
5 2909 bp 34.00 21.71 91.89
NECEvent2014_8_1_scaffold_4256 178_001_scaffold_4256
Species: Clostridium perfringens (100%)
1 1090 bp 29.27 5.50 91.93
NECEvent2014_8_1_scaffold_1533 178_001_scaffold_1533
Species: Clostridium perfringens (100%)
2 3097 bp 31.39 7.94 91.93
NECEvent2014_8_1_scaffold_2003 178_001_scaffold_2003
Species: Clostridium perfringens (100%)
3 2375 bp 29.47 6.82 91.96
NECEvent2014_8_1_scaffold_2523 178_001_scaffold_2523
Species: Clostridium perfringens (100%)
2 1866 bp 32.42 11.09 91.96
NECEvent2014_8_1_scaffold_3222 178_001_scaffold_3222
Species: Clostridium perfringens (100%)
2 1451 bp 31.08 5.58 92.01
NECEvent2014_8_1_scaffold_1850 178_001_scaffold_1850
Species: Clostridium perfringens (100%)
2 2579 bp 29.78 11.81 92.01
NECEvent2014_8_1_scaffold_2896 178_001_scaffold_2896
Species: Clostridium perfringens (100%)
1 1630 bp 31.53 7.36 92.02
NECEvent2014_8_1_scaffold_1159 178_001_scaffold_1159
Species: Clostridium perfringens (100%)
5 4090 bp 28.73 7.00 92.05
NECEvent2014_8_1_scaffold_1270 178_001_scaffold_1270
Species: Clostridium perfringens (100%)
3 3763 bp 33.19 19.29 92.08
NECEvent2014_8_1_scaffold_1798 178_001_scaffold_1798
Species: Clostridium perfringens (100%)
2 2645 bp 31.49 7.37 92.21
NECEvent2014_8_1_scaffold_3174 178_001_scaffold_3174
Species: Clostridium perfringens (100%)
1 1473 bp 34.22 8.35 92.26
NECEvent2014_8_1_scaffold_1745 178_001_scaffold_1745
Species: Clostridium perfringens (100%)
4 2718 bp 33.22 12.91 92.27
NECEvent2014_8_1_scaffold_1110 178_001_scaffold_1110
Species: Clostridium perfringens (100%)
4 4235 bp 33.25 13.74 92.30
NECEvent2014_8_1_scaffold_2370 178_001_scaffold_2370
Species: Clostridium perfringens (100%)
1 1976 bp 33.15 8.20 92.31
NECEvent2014_8_1_scaffold_3518 178_001_scaffold_3518
Species: Clostridium perfringens (100%)
1 1326 bp 33.03 7.01 92.31
NECEvent2014_8_1_scaffold_3098 178_001_scaffold_3098
Species: Clostridium perfringens (100%)
2 1513 bp 29.08 6.74 92.40
NECEvent2014_8_1_scaffold_1810 178_001_scaffold_1810
Species: Clostridium perfringens (100%)
3 2633 bp 29.81 11.05 92.40
NECEvent2014_8_1_scaffold_2558 178_001_scaffold_2558
Species: Clostridium perfringens (100%)
3 1840 bp 32.72 13.29 92.45
NECEvent2014_8_1_scaffold_3235 178_001_scaffold_3235
Species: Clostridium perfringens (100%)
1 1447 bp 32.00 10.16 92.47
NECEvent2014_8_1_scaffold_1539 178_001_scaffold_1539
Species: Clostridium perfringens (100%)
4 3082 bp 31.64 10.32 92.47
NECEvent2014_8_1_scaffold_2603 178_001_scaffold_2603
Species: Clostridium perfringens (100%)
4 1810 bp 29.39 7.46 92.49
NECEvent2014_8_1_scaffold_3752 178_001_scaffold_3752
Species: Clostridium perfringens (100%)
1 1239 bp 31.48 6.54 92.49
NECEvent2014_8_1_scaffold_2440 178_001_scaffold_2440
Species: Clostridium perfringens (100%)
2 1929 bp 27.48 6.84 92.54
NECEvent2014_8_1_scaffold_1151 178_001_scaffold_1151
Species: Clostridium perfringens (100%)
5 4115 bp 30.47 7.36 92.59
NECEvent2014_8_1_scaffold_4164 178_001_scaffold_4164
Species: Clostridium perfringens (100%)
2 1114 bp 29.98 12.79 92.64
NECEvent2014_8_1_scaffold_1385 178_001_scaffold_1385
Species: Clostridium perfringens (100%)
4 3468 bp 30.82 10.38 92.65
NECEvent2014_8_1_scaffold_2563 178_001_scaffold_2563
Species: Clostridium perfringens (100%)
1 1839 bp 26.37 6.53 92.66
NECEvent2014_8_1_scaffold_4317 178_001_scaffold_4317
Species: Clostridium perfringens (100%)
2 1074 bp 30.63 7.54 92.74
NECEvent2014_8_1_scaffold_2805 178_001_scaffold_2805
Species: Clostridium perfringens (100%)
2 1685 bp 34.12 13.35 92.76
NECEvent2014_8_1_scaffold_1183 178_001_scaffold_1183
Species: Clostridium perfringens (100%)
7 4022 bp 31.85 8.73 92.79
NECEvent2014_8_1_scaffold_2331 178_001_scaffold_2331
Species: Clostridium perfringens (100%)
1 2016 bp 32.54 8.11 92.86
NECEvent2014_8_1_scaffold_4597 178_001_scaffold_4597
Species: Clostridium perfringens (100%)
1 1004 bp 27.89 3.29 92.93
NECEvent2014_8_1_scaffold_2848 178_001_scaffold_2848
Species: Clostridium perfringens (100%)
3 1656 bp 29.65 9.42 92.93
NECEvent2014_8_1_scaffold_3853 178_001_scaffold_3853
Species: Clostridium perfringens (100%)
1 1204 bp 28.82 3.49 92.94
NECEvent2014_8_1_scaffold_4254 178_001_scaffold_4254
Species: Clostridium perfringens (100%)
2 1091 bp 30.98 4.67 92.94
NECEvent2014_8_1_scaffold_2666 178_001_scaffold_2666
Species: Clostridium perfringens (100%)
3 1765 bp 31.78 9.86 92.97
NECEvent2014_8_1_scaffold_4134 178_001_scaffold_4134
Species: Clostridium perfringens (100%)
2 1122 bp 26.11 2.14 93.05
NECEvent2014_8_1_scaffold_4222 178_001_scaffold_4222
Species: Clostridium perfringens (100%)
1 1099 bp 35.85 11.87 93.08
NECEvent2014_8_1_scaffold_2220 178_001_scaffold_2220
Species: Clostridium perfringens (100%)
4 2133 bp 31.97 7.31 93.11
NECEvent2014_8_1_scaffold_3564 178_001_scaffold_3564
Species: Clostridium perfringens (100%)
1 1308 bp 31.57 18.35 93.12
NECEvent2014_8_1_scaffold_2721 178_001_scaffold_2721
Species: Clostridium perfringens (100%)
1 1733 bp 29.77 6.06 93.13
Displaying items 251-300 of 731 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.