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NECEvent2014_8_1_Clostridium_perfringens-rel_30_12

NECEvent2014_8_1_Clostridium_perfringens_31_10
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 301-350 of 731 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_2052 178_001_scaffold_2052
Species: Clostridium perfringens (100%)
3 2316 bp 30.53 5.76 93.13
NECEvent2014_8_1_scaffold_3579 178_001_scaffold_3579
Species: Clostridium perfringens (100%)
1 1301 bp 31.67 9.45 93.16
NECEvent2014_8_1_scaffold_3990 178_001_scaffold_3990
Species: Clostridium perfringens (100%)
2 1162 bp 31.93 9.81 93.20
NECEvent2014_8_1_scaffold_3717 178_001_scaffold_3717
Species: Clostridium perfringens (100%)
1 1252 bp 30.67 5.99 93.21
NECEvent2014_8_1_scaffold_1552 178_001_scaffold_1552
Species: Clostridium perfringens (100%)
4 3057 bp 31.31 9.03 93.23
NECEvent2014_8_1_scaffold_2185 178_001_scaffold_2185
Species: Clostridium perfringens (100%)
3 2175 bp 33.33 9.52 93.24
NECEvent2014_8_1_scaffold_1639 178_001_scaffold_1639
Species: Clostridium perfringens (100%)
3 2902 bp 32.05 10.91 93.25
NECEvent2014_8_1_scaffold_2690 178_001_scaffold_2690
Species: Clostridium perfringens (100%)
2 1753 bp 36.91 9.41 93.27
NECEvent2014_8_1_scaffold_3011 178_001_scaffold_3011
Species: Clostridium perfringens (100%)
1 1559 bp 30.92 6.74 93.33
NECEvent2014_8_1_scaffold_3385 178_001_scaffold_3385
Species: Clostridium perfringens (100%)
1 1385 bp 31.34 6.28 93.36
NECEvent2014_8_1_scaffold_2578 178_001_scaffold_2578
Species: Clostridium perfringens (100%)
3 1828 bp 29.49 6.07 93.38
NECEvent2014_8_1_scaffold_2855 178_001_scaffold_2855
Species: Clostridium perfringens (100%)
2 1651 bp 31.25 12.17 93.40
NECEvent2014_8_1_scaffold_3786 178_001_scaffold_3786
Species: Clostridium perfringens (100%)
1 1227 bp 29.67 5.87 93.40
NECEvent2014_8_1_scaffold_2703 178_001_scaffold_2703
Species: Clostridium perfringens (100%)
1 1744 bp 31.14 10.15 93.41
NECEvent2014_8_1_scaffold_1953 178_001_scaffold_1953
Species: Clostridium perfringens (100%)
2 2443 bp 31.19 12.53 93.45
NECEvent2014_8_1_scaffold_1710 178_001_scaffold_1710
Species: Clostridium perfringens (100%)
3 2772 bp 28.28 4.98 93.51
NECEvent2014_8_1_scaffold_1469 178_001_scaffold_1469
Species: Clostridium perfringens (100%)
3 3262 bp 31.09 10.21 93.53
NECEvent2014_8_1_scaffold_1660 178_001_scaffold_1660
Species: Clostridium perfringens (100%)
3 2864 bp 35.13 20.43 93.54
NECEvent2014_8_1_scaffold_1259 178_001_scaffold_1259
Species: Clostridium perfringens (100%)
2 3815 bp 31.19 11.56 93.58
NECEvent2014_8_1_scaffold_4293 178_001_scaffold_4293
Species: Clostridium perfringens (100%)
1 1080 bp 29.35 6.11 93.61
NECEvent2014_8_1_scaffold_2788 178_001_scaffold_2788
Species: Clostridium perfringens (100%)
1 1695 bp 30.68 6.37 93.63
NECEvent2014_8_1_scaffold_3589 178_001_scaffold_3589
Species: Clostridium perfringens (100%)
2 1297 bp 29.68 4.39 93.68
NECEvent2014_8_1_scaffold_3760 178_001_scaffold_3760
Species: Clostridium perfringens (100%)
1 1236 bp 32.04 10.68 93.69
NECEvent2014_8_1_scaffold_1524 178_001_scaffold_1524
Species: Clostridium perfringens (50%)
2 3130 bp 32.40 13.32 93.74
NECEvent2014_8_1_scaffold_2032 178_001_scaffold_2032
Species: Clostridium perfringens (100%)
2 2336 bp 31.42 11.88 93.75
NECEvent2014_8_1_scaffold_1676 178_001_scaffold_1676
Species: Clostridium perfringens (100%)
1 2841 bp 34.35 16.05 93.77
NECEvent2014_8_1_scaffold_3495 178_001_scaffold_3495
Species: Clostridium perfringens (100%)
2 1337 bp 30.67 6.51 93.79
NECEvent2014_8_1_scaffold_3522 178_001_scaffold_3522
Species: Clostridium perfringens (100%)
1 1324 bp 31.34 7.25 93.81
NECEvent2014_8_1_scaffold_4218 178_001_scaffold_4218
Species: Clostridium perfringens (100%)
1 1100 bp 30.82 9.00 93.82
NECEvent2014_8_1_scaffold_3061 178_001_scaffold_3061
Species: Clostridium perfringens (100%)
1 1528 bp 30.10 8.25 93.85
NECEvent2014_8_1_scaffold_1323 178_001_scaffold_1323
Genus: Clostridium (66.67%)
3 3618 bp 25.84 9.04 93.86
NECEvent2014_8_1_scaffold_2490 178_001_scaffold_2490
Species: Clostridium perfringens (100%)
3 1894 bp 32.10 9.19 93.93
NECEvent2014_8_1_scaffold_1058 178_001_scaffold_1058
Genus: Clostridium (100%)
4 4433 bp 30.61 15.84 93.93
NECEvent2014_8_1_scaffold_1864 178_001_scaffold_1864
Genus: Clostridium (100%)
3 2551 bp 27.44 11.58 93.96
NECEvent2014_8_1_scaffold_2461 178_001_scaffold_2461
Species: Clostridium perfringens (100%)
2 1909 bp 31.12 3.61 93.98
NECEvent2014_8_1_scaffold_3055 178_001_scaffold_3055
Species: Clostridium perfringens (100%)
1 1532 bp 30.35 11.16 93.99
NECEvent2014_8_1_scaffold_4033 178_001_scaffold_4033
Species: Clostridium perfringens (100%)
1 1151 bp 31.54 10.30 94.09
NECEvent2014_8_1_scaffold_1848 178_001_scaffold_1848
Species: Clostridium perfringens (100%)
2 2582 bp 32.49 13.25 94.11
NECEvent2014_8_1_scaffold_2008 178_001_scaffold_2008
Species: Clostridium perfringens (100%)
2 2369 bp 28.66 5.95 94.22
NECEvent2014_8_1_scaffold_2305 178_001_scaffold_2305
Species: Clostridium perfringens (100%)
2 2040 bp 32.06 9.56 94.26
NECEvent2014_8_1_scaffold_1786 178_001_scaffold_1786
Species: Clostridium perfringens (100%)
3 2673 bp 31.58 7.07 94.28
NECEvent2014_8_1_scaffold_3074 178_001_scaffold_3074
Species: Clostridium perfringens (100%)
2 1524 bp 27.03 5.61 94.29
NECEvent2014_8_1_scaffold_1328 178_001_scaffold_1328
Species: Clostridium perfringens (100%)
1 3614 bp 31.63 10.54 94.30
NECEvent2014_8_1_scaffold_4053 178_001_scaffold_4053
Species: Clostridium perfringens (100%)
1 1145 bp 28.91 5.76 94.32
NECEvent2014_8_1_scaffold_4578 178_001_scaffold_4578
Species: Clostridium perfringens (100%)
2 1008 bp 26.19 2.68 94.35
NECEvent2014_8_1_scaffold_3421 178_001_scaffold_3421
Species: Clostridium perfringens (100%)
1 1367 bp 31.97 9.66 94.37
NECEvent2014_8_1_scaffold_2529 178_001_scaffold_2529
Species: Clostridium perfringens (83.33%)
6 1859 bp 27.27 6.94 94.41
NECEvent2014_8_1_scaffold_3434 178_001_scaffold_3434
Species: Clostridium perfringens (100%)
1 1361 bp 31.08 6.83 94.56
NECEvent2014_8_1_scaffold_1240 178_001_scaffold_1240
Species: Clostridium perfringens (100%)
2 3868 bp 31.13 18.11 94.62
NECEvent2014_8_1_scaffold_3447 178_001_scaffold_3447
Species: Clostridium perfringens (100%)
2 1356 bp 29.94 6.64 94.69
Displaying items 301-350 of 731 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.