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NECEvent2014_8_3_Clostridium_paraputrificum_30_11

NECEvent2014_8_3_Clostridium_30_12
In projects: NECEvent2014_8_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

Based on gyrA

Displaying items 51-100 of 655 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_3_scaffold_1921 178_003_scaffold_1921
Species: Clostridium botulinum (75%)
4 3662 bp 34.08 14.01 96.67
NECEvent2014_8_3_scaffold_2301 178_003_scaffold_2301
Genus: Clostridium (100%)
3 2860 bp 31.01 14.00 97.24
NECEvent2014_8_3_scaffold_2820 178_003_scaffold_2820
Genus: Clostridium (50%)
4 2199 bp 30.15 13.98 87.59
NECEvent2014_8_3_scaffold_1258 178_003_scaffold_1258
Genus: Clostridium (66.67%)
6 6131 bp 30.86 13.97 83.04
NECEvent2014_8_3_scaffold_1730 178_003_scaffold_1730
Genus: Clostridium (66.67%)
3 4174 bp 31.70 13.94 80.64
NECEvent2014_8_3_scaffold_1549 178_003_scaffold_1549
Genus: Clostridium (83.33%)
6 4813 bp 30.15 13.90 89.20
NECEvent2014_8_3_scaffold_1672 178_003_scaffold_1672
Order: Clostridiales (80%)
5 4378 bp 29.31 13.88 79.69
NECEvent2014_8_3_scaffold_2510 178_003_scaffold_2510
Genus: Clostridium (50%)
4 2550 bp 29.25 13.88 69.22
NECEvent2014_8_3_scaffold_774 178_003_scaffold_774
Genus: Clostridium (81.82%)
11 10522 bp 30.86 13.86 87.67
NECEvent2014_8_3_scaffold_812 178_003_scaffold_812
Genus: Clostridium (60%)
10 10005 bp 31.56 13.85 91.78
NECEvent2014_8_3_scaffold_259 178_003_scaffold_259
Genus: Clostridium (85.71%)
21 24835 bp 32.71 13.84 89.55
NECEvent2014_8_3_scaffold_390 178_003_scaffold_390
Genus: Clostridium (92.86%)
14 19092 bp 31.38 13.83 88.81
NECEvent2014_8_3_scaffold_2729 178_003_scaffold_2729
Genus: Clostridium (66.67%)
3 2303 bp 29.87 13.81 98.35
NECEvent2014_8_3_scaffold_1083 178_003_scaffold_1083
Species: Clostridium baratii (50%)
6 7338 bp 32.00 13.74 89.13
NECEvent2014_8_3_scaffold_923 178_003_scaffold_923
Genus: Clostridium (100%)
5 8703 bp 29.38 13.68 92.35
NECEvent2014_8_3_scaffold_1896 178_003_scaffold_1896
Genus: Clostridium (80%)
5 3731 bp 33.77 13.67 99.54
NECEvent2014_8_3_scaffold_1354 178_003_scaffold_1354
Genus: Clostridium (100%)
5 5665 bp 31.10 13.66 80.39
NECEvent2014_8_3_scaffold_492 178_003_scaffold_492
Genus: Clostridium (89.47%)
19 16391 bp 30.86 13.65 92.61
NECEvent2014_8_3_scaffold_1340 178_003_scaffold_1340
Genus: Clostridium (80%)
5 5701 bp 33.03 13.60 99.30
NECEvent2014_8_3_scaffold_617 178_003_scaffold_617
Genus: Clostridium (64.29%)
14 13135 bp 29.73 13.60 80.37
NECEvent2014_8_3_scaffold_348 178_003_scaffold_348
Genus: Clostridium (95.45%)
22 20951 bp 30.70 13.55 90.37
NECEvent2014_8_3_scaffold_2145 178_003_scaffold_2145
Genus: Clostridium (75%)
4 3137 bp 29.71 13.53 90.09
NECEvent2014_8_3_scaffold_4011 178_003_scaffold_4011
Genus: Clostridium (100%)
3 1366 bp 28.04 13.51 86.75
NECEvent2014_8_3_scaffold_514 178_003_scaffold_514
Genus: Clostridium (88.89%)
18 15626 bp 30.15 13.51 91.21
NECEvent2014_8_3_scaffold_1295 178_003_scaffold_1295
Species: Clostridium botulinum (50%)
4 5888 bp 30.77 13.48 95.07
NECEvent2014_8_3_scaffold_1794 178_003_scaffold_1794
Species: Clostridium baratii (50%)
4 3969 bp 30.26 13.45 98.41
NECEvent2014_8_3_scaffold_2091 178_003_scaffold_2091
Species: Clostridium saccharobutylicum (50%)
4 3274 bp 33.48 13.42 89.62
NECEvent2014_8_3_scaffold_2884 178_003_scaffold_2884
Genus: Clostridium (100%)
4 2126 bp 26.72 13.41 87.21
NECEvent2014_8_3_scaffold_1031 178_003_scaffold_1031
Genus: Clostridium (66.67%)
3 7730 bp 31.98 13.39 92.87
NECEvent2014_8_3_scaffold_1710 178_003_scaffold_1710
Species: Clostridium sp. 7_2_43FAA (50%)
2 4264 bp 34.24 13.37 99.41
NECEvent2014_8_3_scaffold_1466 178_003_scaffold_1466
Genus: Clostridium (100%)
5 5150 bp 31.38 13.34 88.60
NECEvent2014_8_3_scaffold_4568 178_003_scaffold_4568
Species: Clostridium sartagoforme (100%)
1 1126 bp 31.53 13.32 91.39
NECEvent2014_8_3_scaffold_1722 178_003_scaffold_1722
Genus: Clostridium (100%)
3 4215 bp 31.15 13.31 90.53
NECEvent2014_8_3_scaffold_184 178_003_scaffold_184
Genus: Clostridium (76.67%)
30 29639 bp 30.20 13.28 89.96
NECEvent2014_8_3_scaffold_1230 178_003_scaffold_1230
Species: Clostridium sp. 7_2_43FAA (50%)
8 6319 bp 32.87 13.27 90.63
NECEvent2014_8_3_scaffold_3165 178_003_scaffold_3165
Species: Clostridium saccharobutylicum (50%)
2 1877 bp 27.06 13.27 74.16
NECEvent2014_8_3_scaffold_1840 178_003_scaffold_1840
Species: Clostridium botulinum (60%)
5 3850 bp 31.17 13.25 92.49
NECEvent2014_8_3_scaffold_785 178_003_scaffold_785
Genus: Clostridium (100%)
12 10335 bp 30.12 13.22 85.43
NECEvent2014_8_3_scaffold_1351 178_003_scaffold_1351
Genus: Clostridium (88.89%)
9 5668 bp 29.99 13.21 87.67
NECEvent2014_8_3_scaffold_2833 178_003_scaffold_2833
Species: Clostridium sp. 7_2_43FAA (100%)
1 2182 bp 32.08 13.20 88.41
NECEvent2014_8_3_scaffold_2760 178_003_scaffold_2760
Genus: Clostridium (100%)
4 2274 bp 26.65 13.19 84.56
NECEvent2014_8_3_scaffold_1562 178_003_scaffold_1562
Genus: Clostridium (100%)
7 4778 bp 31.27 13.19 95.88
NECEvent2014_8_3_scaffold_930 178_003_scaffold_930
Genus: Clostridium (55.56%)
9 8593 bp 30.47 13.18 87.52
NECEvent2014_8_3_scaffold_936 178_003_scaffold_936
Genus: Clostridium (81.82%)
11 8523 bp 29.85 13.16 83.98
NECEvent2014_8_3_scaffold_187 178_003_scaffold_187
Genus: Clostridium (100%)
24 29364 bp 30.21 13.16 91.00
NECEvent2014_8_3_scaffold_1991 178_003_scaffold_1991
Genus: Clostridium (100%)
3 3494 bp 31.05 13.14 93.59
NECEvent2014_8_3_scaffold_1868 178_003_scaffold_1868
Species: Clostridium baratii (66.67%)
3 3800 bp 30.16 13.14 93.47
NECEvent2014_8_3_scaffold_3569 178_003_scaffold_3569
Species: Clostridium bornimense (100%)
1 1600 bp 29.88 13.13 99.75
NECEvent2014_8_3_scaffold_546 178_003_scaffold_546
Genus: Clostridium (93.33%)
15 14819 bp 30.15 13.12 85.47
NECEvent2014_8_3_scaffold_884 178_003_scaffold_884
Genus: Clostridium (66.67%)
6 9158 bp 30.21 13.12 89.51
Displaying items 51-100 of 655 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.